[gmx-users] constrained bonds

[marzieh dehghan]

Hi every body

I created covalent bond by the latest version of autodock.according to the
tutorial of protein-ligand complex with gromacs, the result of covalent
bond was used for MD. after energy minimization, ligand was separated from
protein.

 I would like to know how can I occur constrained bond between protein and
ligand to keep them in the suitable distance?

thanks a lot

best wishes

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*Marzieh DehghanPhD Candidate of BiochemistryInstitute of biochemistry and
Biophysics (IBB)University of Tehran, Tehran- Iran.*