[gmx-users] with 5.0: file INSTALL cannot find gmx

[Johnny Lu]

maybe ... compile it on the head node of the cluster, and hope it has a
local storage?

fftpack is slow, and let gromacs build its own fftw3 library is better. I
don't know if the fftpack code of gromacs is old.

May be

Location of where you run cmake/CMakeFiles/CMakeError.log

will tell a bit more.


On Fri, Dec 12, 2014 at 1:24 PM, Jochen Hub <jhub at gwdg.de> wrote:
>
>
>
> Am 12/12/14 19:07, schrieb Mark Abraham:
> > Hi,
> >
> > I have seen similar behaviour on "interesting" setups, e.g. where the
> same
> > physical file system has different logical locations, but I don't know
> > where the issue is. $(pwd) should be expanded by the shell before cmake
> > sees it, so how a wrong path could get into cmake_install.cmake is a
> > mystery to me.
>
> This may in fact be the issue. Our computing center has some extra-fancy
> distributed file system. And the webserver we are running is a on a
> virtual machine, so also some kind of distributed thingie...
>
> Hmpf - so is there no solution for that?
>
> Jochen
>
> >
> > Mark
> >
> > On Fri, Dec 12, 2014 at 6:33 PM, Johnny Lu <johnny.lu128 at gmail.com>
> wrote:
> >>
> >> I'm not sure what happened, but so far when i install, i use full path
> >> instead of $(pwd) and it was fine for gromacs 4.6 and 5.0, 5.0.2.
> >> --
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>
> --
> ---------------------------------------------------
> Dr. Jochen Hub
> Computational Molecular Biophysics Group
> Institute for Microbiology and Genetics
> Georg-August-University of Göttingen
> Justus-von-Liebig-Weg 11, 37077 Göttingen, Germany.
> Phone: +49-551-39-14189
> http://cmb.bio.uni-goettingen.de/
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