[gmx-users] with 5.0: file INSTALL cannot find gmx

[Johnny Lu]

Oh, and what version of cmake are you using?

If that is too old, you can compile a newer version of cmake and then use
that.

On Fri, Dec 12, 2014 at 1:35 PM, Johnny Lu <johnny.lu128 at gmail.com> wrote:
>
> maybe ... compile it on the head node of the cluster, and hope it has a
> local storage?
>
> fftpack is slow, and let gromacs build its own fftw3 library is better. I
> don't know if the fftpack code of gromacs is old.
>
> May be
>
> Location of where you run cmake/CMakeFiles/CMakeError.log
>
> will tell a bit more.
>
>
> On Fri, Dec 12, 2014 at 1:24 PM, Jochen Hub <jhub at gwdg.de> wrote:
>>
>>
>>
>> Am 12/12/14 19:07, schrieb Mark Abraham:
>> > Hi,
>> >
>> > I have seen similar behaviour on "interesting" setups, e.g. where the
>> same
>> > physical file system has different logical locations, but I don't know
>> > where the issue is. $(pwd) should be expanded by the shell before cmake
>> > sees it, so how a wrong path could get into cmake_install.cmake is a
>> > mystery to me.
>>
>> This may in fact be the issue. Our computing center has some extra-fancy
>> distributed file system. And the webserver we are running is a on a
>> virtual machine, so also some kind of distributed thingie...
>>
>> Hmpf - so is there no solution for that?
>>
>> Jochen
>>
>> >
>> > Mark
>> >
>> > On Fri, Dec 12, 2014 at 6:33 PM, Johnny Lu <johnny.lu128 at gmail.com>
>> wrote:
>> >>
>> >> I'm not sure what happened, but so far when i install, i use full path
>> >> instead of $(pwd) and it was fine for gromacs 4.6 and 5.0, 5.0.2.
>> >> --
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>>
>> --
>> ---------------------------------------------------
>> Dr. Jochen Hub
>> Computational Molecular Biophysics Group
>> Institute for Microbiology and Genetics
>> Georg-August-University of Göttingen
>> Justus-von-Liebig-Weg 11, 37077 Göttingen, Germany.
>> Phone: +49-551-39-14189
>> http://cmb.bio.uni-goettingen.de/
>> ---------------------------------------------------
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>