[gmx-users] Segfault on energy minimization

Diego Muñoz G. diego.munoz.g at ug.uchile.cl
Fri Dec 12 20:05:20 CET 2014

Dear Gromacs users, 
  I'm trying to launch a MD calculation involving silver atoms, but when I run the 
energy minimization gromacs crashes into a Segmentation Fault. This is:
when I type:
mpirun -H nodo1 -np 8 gmx_mpi mdrun -deffnm solvent_test
y get this output: http://pastebin.com/JeNqVFgc[1] 

I've tried rebuilding the topology file, reinstalling gromacs, and testing the same run on 
another computer obtaining the same result.
Does anyone knows what could I have done wrong?

Im using Gromacs 5.0.2 with MPI support on Archlinux.
Diego Muñoz G
Departmento de Química
Laboratorio Fisicoquímica Molecular
Facultad de Ciencias
Universidad de Chile
Fax: 562-22713888
Tel: 562-29787342

[1] http://pastebin.com/JeNqVFgc

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