[gmx-users] Stop protein diffusion in simulation box to make a movie

Hassan Aaryapour hassan.gromacs at gmail.com
Sat Dec 13 12:04:12 CET 2014

Dear Gromacs Users,
I made a trajectory movie using VMD and smoothing increased for
getting the residues motion slower, but the protein is translate and
diffuse in box, and causes very hard of seeing and analyzing how
ligand structure changes during simulation. How can I stop the protein
translation and following ligand motion easier?

Thank you in advance

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