[gmx-users] Stop protein diffusion in simulation box to make a movie

[Johnny Lu]

hi. can this help?

http://manual.gromacs.org/programs/gmx-trjconv.html

On Sat, Dec 13, 2014 at 6:04 AM, Hassan Aaryapour <hassan.gromacs at gmail.com>
wrote:
>
> Dear Gromacs Users,
> I made a trajectory movie using VMD and smoothing increased for
> getting the residues motion slower, but the protein is translate and
> diffuse in box, and causes very hard of seeing and analyzing how
> ligand structure changes during simulation. How can I stop the protein
> translation and following ligand motion easier?
>
> Thank you in advance
> Hassan
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