[gmx-users] CG MD Simulation of DNA and PAMAM dendrimers

[Doa Hawamdeh]

Dear GROMACS users:

I want to study the complexation between PAMAM dendrimer and DNA using
coarse-graining molecular dynamics simualtions (MARTINI force field)
utilizing GROMACS version 5.0.3.

MD integrator is used with time step of 20 fs, but I could not run the
simulation with this time step, I got *segmentation fault.  *Sure before
running long simulation I minimized the system. I attached the .mdp file
that I use. Could you please help me?

Waiting your response.

Thank you.
Doa