[gmx-users] CG MD Simulation of DNA and PAMAM dendrimers

Johnny Lu johnny.lu128 at gmail.com
Wed Dec 17 20:48:59 CET 2014

Hi. This mail list can not take attachment. So it might be better to just
past the mdp file in the message.

At which time step did the segmentation fault happen?

On Wed, Dec 17, 2014 at 1:43 PM, Doa Hawamdeh <hawamdeh.doa at gmail.com>
> Dear GROMACS users:
> I want to study the complexation between PAMAM dendrimer and DNA using
> coarse-graining molecular dynamics simualtions (MARTINI force field)
> utilizing GROMACS version 5.0.3.
> MD integrator is used with time step of 20 fs, but I could not run the
> simulation with this time step, I got *segmentation fault.  *Sure before
> running long simulation I minimized the system. I attached the .mdp file
> that I use. Could you please help me?
> Waiting your response.
> Thank you.
> Doa
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