[gmx-users] Non-bonded interactions
jalemkul at vt.edu
Sat Dec 20 15:16:37 CET 2014
On 12/20/14 9:12 AM, Doa Hawamdeh wrote:
> Dear All,
> I want to use GROMACS 5.0.3 to simulate charged groups in my system, what
> are the types of the nonbonded interactions (lennard-Jones and coulomb)
> that I have to use??
All biomolecular force fields in Gromacs were parametrized to include LJ and
Coulombic interactions in their functional forms, so I don't really know what
can be the question here. The methods for calculating those forces/energies
vary between force fields, but those algorithms and cutoff lengths are fixed
aspects of the force field that you use based on what the force field literature
Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow
Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201
jalemkul at outerbanks.umaryland.edu | (410) 706-7441
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