[gmx-users] gmxcheck : Magic Number Error in XTC file (read 0, should be 1995)
David van der Spoel
spoel at xray.bmc.uu.se
Wed Dec 24 16:26:19 CET 2014
On 2014-12-24 15:33, Amit Kumawat wrote:
> Dear Gromacs Users,
> I have a trajectory of 2microsecond.
> I am trying to use gmxcheck to analyse trajectory but I am getting
> following error;
> Program gmxcheck, VERSION 4.6.5
> Source code file: /home/suman/sources/gromacs-4.6.5/src/gmxlib/xtcio.c,
> line: 92
> Fatal error:
> Magic Number Error in XTC file (read 0, should be 1995)
> I have seen similar questions in the mailing list describing the trajectory
> may be corrupted. If its true in all the cases of this error, Is there any
> way to recover the trajectory?
> Please provide suggestion to solve the error.
trjconv -f old.xtc -o new.xtc
to see how much is corrupt.
> Amit R. Kumawat
> Junior Research Fellow,
> Physical & Materials Chemistry Division
> CSIR-National Chemical Laboratory
> Pune, INDIA
David van der Spoel, Ph.D., Professor of Biology
Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone: +46184714205.
spoel at xray.bmc.uu.se http://folding.bmc.uu.se
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