[gmx-users] Fwd: Segmentation fault with mdrun

Pavan Kumar kumar.pavan006 at gmail.com
Thu Feb 20 12:35:50 CET 2014

---------- Forwarded message ----------
From: Pavan Kumar <kumar.pavan006 at gmail.com>
Date: Thu, Feb 20, 2014 at 3:34 PM
Subject: Segmentation fault with mdrun
To: gromacs.org_gmx-users-request at maillist.sys.kth.se


I am using gromacs 4.6.5.
I am running my code on the cluster providing 8 nodes and 4 processor each.
I am getting "Segmentation Fault" while running mdrunmpi

My command
*mpirun -n 8 mdrunmpi.4.6.5 -v -deffnm em*

More Details:
*Machine : GNU/Linux x86_64*

*gcc (GCC) 4.3.3 *
*cmake version 2.8.3*

Compilation Details:

*I have compiled my code using mpich compiler *

-DCMAKE_C_COMPILER=/opt/mpich2/gnu/bin/mpicc -DGMX_BUILD_OWN_FFTW=ON

If there is any problem in compiling the code itself, what is the error and
how it could be corrected.
Please give me any solutions, why i am getting the above error.

Thanks & Regards,
Pavan Kumar
Project Engineer
Ph +91-7676367646

Thanks & Regards,
Pavan Kumar
Project Engineer
Ph +91-7676367646

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