[gmx-users] help with "interaction of type atom in the topology database, but an atom of that name was not found in residue" error
amianxie at gmail.com
Mon Jan 6 21:13:47 CET 2014
I noticed that there has been a few posts about this topic posted in this
forum, but I have tried those proposed solutions and it still doesn't work.
I have downloaded a force field, gromos43a1p (from
installed it at my working folder. When I used pdb2gmx, I was able to find
and use gromos43a1p for my target proteins containing phosphated residue(s)
(downloaded from pdb website), but got the error message pasted below:
Atom N is used in an interaction of type improper in the topology
database, but an atom of that name was not found in residue
Does anyone know what is the problem? Thanks a lot!
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