[gmx-users] How to visualize the Free Energy Landscape file generated by g_sham
tarak20489 at gmail.com
Wed Jan 29 06:51:24 CET 2014
You can use GNU 3D plot for this particular case.
On Wed, Jan 29, 2014 at 8:02 AM, Monoj Mon Kalita <mon.123chem at gmail.com>wrote:
> Dear Gromacs user,
> I have used the g_sham method to generate free-energy-landscape.xpm file.
> To do that I have followed this website
> Now my problem is how to plot RMSD, radius of gyration and free energy in a
> single file . I can have a plot of Rg and RMSD in 2D, but unable to plot
> Rg, RMSD and Free energy value in a single file as they have shown in the
> website. I have used the mathematica software version 9 and have used the
> notepad given by the website. When I execute the program it doesn't show
> any output. Is there any other way to have a nice plot of Rg, RMSD and Free
> energy together in a single polt? Have a nice day.
> With Regards
> Monoj Mon Kalita
> Institute of Biophotonics<
> Fischer's Lab <http://www.ym.edu.tw/~wfischer/group.html>
> National Yang-Ming University<
> Taipei, Taiwan
> mon.123chem at gmail.com
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