[gmx-users] Out of Disk Space
mutemibiochemistry at gmail.com
Tue Mar 4 15:30:54 CET 2014
When you use the grompp command to prepare the md.tpr file for the final
mdrun, do you notice such a statement "This run will generate roughly XXXXX
Mb of data". I suspect the resultant trajectory could be exceeding the
On Tue, Mar 4, 2014 at 4:12 PM, Pavan Kumar <kumar.pavan006 at gmail.com>wrote:
> Hi everybody,
> I am running mdrun_mpi V 4.6.5 for nsteps=10000000; 20 ns
> My simulation is getting stopped at 500ps and I am getting following error
> even though i have enough space on my cluster around 17 GB.
> *Cannot fsync 'md1.trr'; maybe you are out of disk space?*
> *Cannot fsync 'md1.log'; maybe you are out of disk space?*
> I have executed for two times, each time i get different error.
> What is the reason for the above error. I am sharing my mdp file.
> Any help is appreciated.
> Thanks & Regards,
> Pavan Kumar
> Project Engineer
> CDAC -KP
> Ph +91-7676367646
> Gromacs Users mailing list
> * Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
> * For (un)subscribe requests visit
> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> send a mail to gmx-users-request at gromacs.org.
More information about the gromacs.org_gmx-users