[gmx-users] Out of Disk Space

[Pavan Kumar]

Hello THOMMAS,

Exactly, it showed 2.2GB of trajectory is going to be created.
But i have 17GB of free space on my cluster on which i am running.
So any other reasons for the error.
Thanks in advance.


On Tue, Mar 4, 2014 at 8:00 PM, MUSYOKA THOMMAS <
mutemibiochemistry at gmail.com> wrote:

> Hi Pavan,
> When you use the grompp command to prepare the md.tpr file for the final
> mdrun, do you notice such a statement "This run will generate roughly XXXXX
> Mb of data". I suspect the resultant trajectory could be exceeding the
> available space.
>
>
> On Tue, Mar 4, 2014 at 4:12 PM, Pavan Kumar <kumar.pavan006 at gmail.com
> >wrote:
>
> > Hi everybody,
> > I am running mdrun_mpi V 4.6.5 for nsteps=10000000; 20 ns
> > My simulation is getting stopped at 500ps and I am getting following
> error
> > even though i have enough space on my cluster around 17 GB.
> >
> > *Cannot fsync 'md1.trr'; maybe you are out of disk space?*
> > *Cannot fsync 'md1.log'; maybe you are out of disk space?*
> >
> >
> >  I have executed for two times, each time i get different error.
> >
> > What is the reason for the above error. I am sharing my mdp file.
> > Any help is appreciated.
> > --
> > Thanks & Regards,
> > Pavan Kumar
> > Project Engineer
> > CDAC -KP
> > Ph +91-7676367646
> >
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-- 
Thanks & Regards,
Pavan Kumar