[gmx-users] help with g_puckering

cesteban at unsl.edu.ar cesteban at unsl.edu.ar
Wed Mar 5 19:23:40 CET 2014

Hi all
I tried to use the program g_puckering and I had trouble compiling. I am
using Gromacs 4.5.3 (linux CENTOS 6.2) and I have tried to install the
analysis-tool g_puckering_gmx4_0_x.
I followed the instructions of the README help:

- Adjust the LDFLAGS and INCLUDES in the Makefile.tmpl
  matching to your location of gromacs and X11.
- run make

At this stage the following error appears:

for i in build src; do make -C $i all; done
make[1]: Entering directory `/home/adrian/g_puckering/build'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/home/adrian/g_puckering/build'
make[1]: Entering directory `/home/adrian/g_puckering/src'
gcc -g -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused
-malign-double -funroll-all-loops -I/usr/include -I/usr/include/libxml2
-I/share/apps/gromacs453/include/gromacs -c g_puckering.c
make[1]: Leaving directory `/home/adrian/g_puckering/src'

Please, could anyone guide me how to proceed with the installation of the
Your suggestions will help me a lot.
Thank you very much

 Carmen Esteban
Universidad Nacional de San Luis- Argentina

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