[gmx-users] help regarding building topology of Lanitibiotics (small natural peptides)

[Gaurav Saraf IDD M Tech Biochem. Engg, IIT (BHU)]

Respected Sir/Ma'am

I am new to the field of simulations and want to perform
protein-peptide simulations. I am facing troubles with building the
topology for my peptides as they contain various modified amino acids
which the rtp does not recognise.

Attachments: one of the pdb file of a lantibiotic (2KTO is the RCSB code)

Thanking you,


Yours sincerely,
Gaurav
School of Biochemical Engineering.
Indian Insitute of Technology (BHU), Varanasi.
India.