[gmx-users] help regarding building topology of Lanitibiotics (small natural peptides)

Gaurav Saraf IDD M Tech Biochem. Engg, IIT (BHU) gaurav.saraf.bce09 at itbhu.ac.in
Fri Mar 28 14:40:25 CET 2014

Respected Sir/Ma'am

I am new to the field of simulations and want to perform
protein-peptide simulations. I am facing troubles with building the
topology for my peptides as they contain various modified amino acids
which the rtp does not recognise.

Attachments: one of the pdb file of a lantibiotic (2KTO is the RCSB code)

Thanking you,

Yours sincerely,
School of Biochemical Engineering.
Indian Insitute of Technology (BHU), Varanasi.

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