[gmx-users] help regarding building topology of Lanitibiotics (small natural peptides)
chetan kumar meena
chetan.shadowkillermeena at gmail.com
Fri Mar 28 14:46:37 CET 2014
try prodrug for small molecule for topology generation.
On Fri, Mar 28, 2014 at 3:03 PM, Gaurav Saraf IDD M Tech Biochem. Engg, IIT
(BHU) <gaurav.saraf.bce09 at itbhu.ac.in> wrote:
> Respected Sir/Ma'am
> I am new to the field of simulations and want to perform
> protein-peptide simulations. I am facing troubles with building the
> topology for my peptides as they contain various modified amino acids
> which the rtp does not recognise.
> Attachments: one of the pdb file of a lantibiotic (2KTO is the RCSB code)
> Thanking you,
> Yours sincerely,
> School of Biochemical Engineering.
> Indian Insitute of Technology (BHU), Varanasi.
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Chetan Kumar Meena
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