[gmx-users] help regarding building topology of Lanitibiotics (small natural peptides)

[chetan kumar meena]

try prodrug for small molecule for topology generation.


On Fri, Mar 28, 2014 at 3:03 PM, Gaurav Saraf IDD M Tech Biochem. Engg, IIT
(BHU) <gaurav.saraf.bce09 at itbhu.ac.in> wrote:

> Respected Sir/Ma'am
>
> I am new to the field of simulations and want to perform
> protein-peptide simulations. I am facing troubles with building the
> topology for my peptides as they contain various modified amino acids
> which the rtp does not recognise.
>
> Attachments: one of the pdb file of a lantibiotic (2KTO is the RCSB code)
>
> Thanking you,
>
>
> Yours sincerely,
> Gaurav
> School of Biochemical Engineering.
> Indian Insitute of Technology (BHU), Varanasi.
> India.
>
> --
> Gromacs Users mailing list
>
> * Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> posting!
>
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
> * For (un)subscribe requests visit
> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> send a mail to gmx-users-request at gromacs.org.
>
>


-- 
Regards
Chetan Kumar Meena
Ph.D. Bioinformatics
Pondicherry University
R28448
PUDUCHERRY
Pin:605014