[gmx-users] -res option in g_rmsf

[Tsjerk Wassenaar]

Hi Dawid,

That depends on your index group.

Cheers,

Tsjerk


On Mon, Sep 1, 2014 at 2:51 PM, Dawid das <addiw7 at googlemail.com> wrote:

> Dear Gromacs experts,
>
> Let's say I calculate RMSF for each residue (-res), using Protein group
> from index file. Now what atoms are actually taken for a residue? Only
> sidechain atoms or sidechain atoms plus backbone ones?
>
> Best wishes,
>
> Dawid Grabarek
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-- 
Tsjerk A. Wassenaar, Ph.D.