[gmx-users] GPU job failed
pall.szilard at gmail.com
Mon Sep 8 23:34:39 CEST 2014
It looks like you're starting two ranks and passing two GPU IDs so it
should work. The only think I can think of is that you are either
getting the two MPI ranks placed on different nodes or that for some
reason "mpirun -np 2" is only starting one rank (MPI installation
Does the same setup work with thread-MPI?
On Mon, Sep 8, 2014 at 2:50 PM, Albert <mailmd2011 at gmail.com> wrote:
> I am trying to use the following command in Gromacs-5.0.1:
> mpirun -np 2 mdrun_mpi -v -s npt2.tpr -c npt2.gro -x npt2.xtc -g npt2.log
> -gpu_id 01 -ntomp 10
> but it always failed with messages:
> 2 GPUs detected on host cudaB:
> #0: NVIDIA GeForce GTX 780 Ti, compute cap.: 3.5, ECC: no, stat:
> #1: NVIDIA GeForce GTX 780 Ti, compute cap.: 3.5, ECC: no, stat:
> 2 GPUs user-selected for this run.
> Mapping of GPUs to the 1 PP rank in this node: #0, #1
> Program mdrun_mpi, VERSION 5.0.1
> Source code file:
> line: 359
> Fatal error:
> Incorrect launch configuration: mismatching number of PP MPI processes and
> GPUs per node.
> mdrun_mpi was started with 1 PP MPI process per node, but you provided 2
> For more information and tips for troubleshooting, please check the GROMACS
> website at http://www.gromacs.org/Documentation/Errors
> However, this command works fine in Gromacs-4.6.5, and I don't know why it
> failed in 5.0.1. Does anybody have any idea?
> thx a lot
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