[gmx-users] PBC problem in bilayer system

shahab shariati shahab.shariati at gmail.com
Thu Sep 11 19:51:21 CEST 2014

Dear Justin

Very thanks for your answer.

Unfortunately, I am beginner in MD simulation of bilayer membrane systems.
Based on your answer (You can try the translation options of trjconv in
conjunction with -pbc mol), should I use following command?

trjconv –trans –pbc mol

trjconv –pbc nojump

Best wishes

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