[gmx-users] PBC problem in bilayer system

[Justin Lemkul]

On 9/13/14 7:59 AM, shahab shariati wrote:
> Dear Justin
>
> you said " The -trans option takes a vector where you specify the amount of
> translation to apply "
>
> I do not know what vector should be considered in -trans option.
>

Well, what have you tried?  You need to shift your system along z, the direction 
doesn't really matter.  The exact magnitude depends on the dimensions of the system.

-Justin

-- 
==================================================

Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

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