[gmx-users] PBC problem in bilayer system
jalemkul at vt.edu
Sun Sep 14 13:54:50 CEST 2014
On 9/13/14 7:59 AM, shahab shariati wrote:
> Dear Justin
> you said " The -trans option takes a vector where you specify the amount of
> translation to apply "
> I do not know what vector should be considered in -trans option.
Well, what have you tried? You need to shift your system along z, the direction
doesn't really matter. The exact magnitude depends on the dimensions of the system.
Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow
Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201
jalemkul at outerbanks.umaryland.edu | (410) 706-7441
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