[gmx-users] PBC problem in bilayer system
shahab.shariati at gmail.com
Sun Sep 14 15:52:23 CEST 2014
I did following:
trjconv -f *.xtc -s *.tpr -n *.ndx -o **.xtc -trans 6.46063 6.57889 9
Based on your reply*, *I translated all system along the z.
I used x and y according to box dimension.
I used 9, instead of z dimension (8.30034), for z.
When I see **.xtc using vmd, problem was not solved.
Should I increase or decrease z value for -trans option?
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