[gmx-users] undefined symbol: TMPI_BYTE

[Chandan Choudhury]

Dear Mark,

Thanks for the reply.
Use of -DGMX_LIBS_SUFFIX=_466 did resolve the issue.

I was facing the same issue on three servers, and compile gmx with
_DGMX_LIBS_SUFFIX resolved the issue.

Thanks your your help.

Chandan


On Mon, Sep 15, 2014 at 1:02 PM, Mark Abraham <mark.j.abraham at gmail.com>
wrote:

> Hi,
>
> That seems like a novel achievement. Perhaps you haven't sourced GMXRC like
> you should, or removed some library like you shouldn't... AFAIK it should
> not be essential to use -DGMX_LIBS_SUFFIX=_466 in concert with your other
> choices, but it would be wise to do so.
>
> Mark
>
> On Sat, Sep 13, 2014 at 3:09 PM, Chandan Choudhury <iitdckc at gmail.com>
> wrote:
>
> > Dear gmx users,
> >
> > Following error pops up when I try to run mdrun (v4.6.6)
> > $ mdrun_466 -h
> > mdrun_466: symbol lookup error: mdrun_466: undefined symbol: TMPI_BYTE
> >
> > Can anyone suggest me the workaround to this?
> >
> > I have compiled the gmx 466 using following commands:
> >
> > CMAKE_PREFIX_PATH=$apps/fftw/3.3.3/single cmake .. \
> > -DCMAKE_INSTALL_PREFIX=$apps/gromacs/466/single \
> > -DGMX_X11=ON -DGMX_DEFAULT_SUFFIX=OFF -DGMX_BINARY_SUFFIX=_466 \
> > -DGMX_DOUBLE=OFF \
> > && make -j 12 && make -j 12 install
> >
> > gcc 4.8.1 was used to compile.
> >
> > Architecture:
> > AMD Opteron(tm) Processor 4180
> >
> > Chandan
> >
> >
> > --
> > Chandan Kumar Choudhury
> > National Chemical Laboratory, Pune
> > India
> >
> > *"All work and no play makes Jack a dull boy...”*
> > --
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-- 

--
Chandan Kumar Choudhury
National Chemical Laboratory, Pune
India

*"All work and no play makes Jack a dull boy...”*