[gmx-users] distance tracking

[Justin Lemkul]

On 9/17/14 7:01 AM, h.alizadeh at znu.ac.ir wrote:
> Dear GROMACS users,
> Is it possible to track H-bonding or distance between two certain atoms in
> GROMACS?

Of course.  See Chapter 8 for available analysis tools.  There are several 
designed to do exactly what you want.

-Justin

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Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

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