[gmx-users] gromacs error

Yaser Hosseini yaser.hosseini.biologist at gmail.com
Mon Sep 22 16:14:46 CEST 2014


hi guys i have a problems with gromacs command .how can i can solve
this problems:
i install gromacs and i dont know what can i do:


gmx solvate -cp 1AKI_newbox.gro -cs spc216.gro -o 1AKI_solv.gro -p topol.top
No command 'gmx' found, did you mean:
 Command 'gcx' from package 'gcx' (universe)
 Command 'ngmx' from package 'gromacs' (universe)
 Command 'gm' from package 'graphicsmagick' (universe)
 Command 'gmt' from package 'libgenome-perl' (universe)
gmx: command not found


and other problem :

solvate -cp 1AKI_newbox.gro -cs spc216.gro -o 1AKI_solv.gro -p topol.top
solvate: command not found

thank you for your help.


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