[gmx-users] Regarding GROMACS Tutorial "KALP15 in DPPC"

[Anurag Dobhal]

Dear users.


I am doing the tutorial "KALP15 in DPPC".

I heve done till the command

perl inflategro.pl system.gro 4 DPPC 14 system_inflated.gro 5 area.dat

and then i minimised the the system by running the command

mdrun -v -deffnm em

now i am unable to understand how to produce "confout.gro"


please help how to proceed and where I am wrong.


Thank you


Anurag Dobhal


On Sun, Sep 28, 2014 at 5:37 PM, Anurag Dobhal <
anurag.dobhal at nano-medicine.co.in> wrote:

> Dear users.
>
>
> I am doing the tutorial "KALP15 in DPPC".
>
> I heve done till the command
>
> "genrestr -f KALP_newbox.gro -o strong_posre.itp -fc 100000 100000
> 100000"
>
> after that I am not able to understand wat to do and how to solvate the
> system.
>
> please can anyone expalin me in easy words how to proceed.
>
> Please help
>
>
> Anurag Dobhal
>
>
>
>
>
>

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