[gmx-users] Add missing residue

Nizar Masbukhin nizar.fkub08 at gmail.com
Sun Sep 28 17:20:07 CEST 2014


Thanks Mark,
I will try swiss-Pdb viewer.

On Sun, Sep 28, 2014 at 9:45 PM, Mark Abraham <mark.j.abraham at gmail.com>
wrote:

> Hi,
>
> There are some suggestions at
> http://www.gromacs.org/Documentation/File_Formats/Coordinate_File
>
> Mark
>
> On Sun, Sep 28, 2014 at 4:35 PM, Nizar Masbukhin <nizar.fkub08 at gmail.com>
> wrote:
>
> > Dear users,
> >
> > I'm going to simulate a protein. On the pdb file contents, it's said that
> > this protein has two chains, and missing residues and atoms. when I try
> to
> > pdb2gmx, the error messages occured. It seemed due tue the missing
> residue
> > so that i got the message error.
> > My question is: How can I add missing resiudes and atoms to the pdb files
> > so that i can use it?
> >
> > Thanks
> > --
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-- 
Thanks
My Best Regards, Nizar
Medical Faculty of Brawijaya University


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