[gmx-users] regarding GROMACS Tutorial KALP15 in DPPC

Anurag Dobhal anurag.dobhal at nano-medicine.co.in
Tue Sep 30 11:52:01 CEST 2014


Hello gromacs users.


I am running GROMACS Tutorial of  KALP15 in DPPC.

I am in the step define box and solvate.

after the command

perl inflategro.pl confout.gro 0.95 DPPC 0 system_shrink1.gro 5 area_shrink1.dat


i am getting an error as

Use of uninitialized value $box_x in multiplication (*) at
inflategro.pl line 339.
Use of uninitialized value $box_y in multiplication (*) at
inflategro.pl line 340.
Scaling lipids....
There are 0 lipids...
Illegal division by zero at inflategro.pl line 380.

I am repeating the step third time and I am getting the same error.

please help me how to skip this error.


Thank you.

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