[gmx-users] Environmental variable setting for gmx 5.0.4

[Mark Abraham]

Hi,

Google is a good place to seek the answer for you shell and distribution -
sounds like on centos you are not actually using bash!

Mark
On 02/04/2015 4:03 am, "RJ" <rajiv at kaist.ac.kr> wrote:

> Thanks a lot for your info Peter and Yoochan,
>
>
> Adding the source in /etc/bash.bashrc works in ubuntu.
>
>
> But I tried many times adding in ~/.bashrc before but it never worked to
> me.
>
>
> How do i deal wiith centos ? it doesnt have /etc/bash.bashrc file. I also
> added in ~/.bashrc but it doesnt work.
>
>
> Any suggestion plz?
>
>
>
>
> Date: Wed, 1 Apr 2015 17:20:29 +0900
> From: yoochan <yuchan.m at gmail.com>
> To: gmx-users at gromacs.org
> Subject: Re: [gmx-users] Environmental variable setting for gmx 5.0.4
> Message-ID: <53F2341B-5A16-48DF-A520-5D0C26AFD4C4 at gmail.com>
> Content-Type: text/plain; charset=utf-8
>
> Hi RJ,
>
> I think you need to inscribe 'source command' in your bash file.
>
> In case of Ubuntu environment, If you insert 'source command' for
> /etc/bash.bashrc, you can do use gromacs in all terminals without typing
> source command.
>
> You don?t need to set your PATH as you mentioned earlier.
>
> Yoochan
>
> > On Apr 1, 2015, at 2:35 PM, RJ <rajiv at kaist.ac.kr> wrote:
> >
> > Dear gmx,
> > I have installed the gmx in my ubuntu and centos system and tried to set
> the environmental variable path in-order to use without mentioning the
> source commend in my terminal of linux.
> >
> >
> > I tried to set my path as follows but couldn't success it.
> >
> >
> > export PATH=/usr/local/gromacs/bin/:$PATH
> >
> >
> > my "which gmx" shows the following installed path
> >
> >
> > /usr/local/gromacs/bin//gmx
> >
> >
> > I only able to obtain the gmx as every time by mentioning "source
> /usr/local/gromacs/bin/GMXRC"
> >
> >
> > Please advice me how do make gmx to work in default in all terminal ?
> > --
> > Gromacs Users mailing list
> >
> > * Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> posting!
> >
> > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
> >
> > * For (un)subscribe requests visit
> > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> send a mail to gmx-users-request at gromacs.org.
>
>
> Date: Wed, 01 Apr 2015 10:35:00 +0200
> From: Peter Kroon <p.c.kroon at rug.nl>
> To: gmx-users at gromacs.org
> Subject: Re: [gmx-users] Environmental variable setting for gmx 5.0.4
> Message-ID: <551BADB4.8070504 at rug.nl>
> Content-Type: text/plain; charset="utf-8"
>
>
>
> On 04/01/2015 10:20 AM, yoochan wrote:
> > Hi RJ,
> >
> > I think you need to inscribe 'source command' in your bash file.
> >
> > In case of Ubuntu environment, If you insert 'source command' for
> /etc/bash.bashrc, you can do use gromacs in all terminals without typing
> source command.
> This would affect all users on the system. If you add 'source
> /usr/local/gromacs/bin/GMXRC' to the file ~/.bashrc it will only affect
> your user.
>
> Good luck,
> Peter
>
> >
> > You don?t need to set your PATH as you mentioned earlier.
> >
> > Yoochan
> >
> >> On Apr 1, 2015, at 2:35 PM, RJ <rajiv at kaist.ac.kr> wrote:
> >>
> >> Dear gmx,
> >> I have installed the gmx in my ubuntu and centos system and tried to
> set the environmental variable path in-order to use without mentioning the
> source commend in my terminal of linux.
> >>
> >>
> >> I tried to set my path as follows but couldn't success it.
> >>
> >>
> >> export PATH=/usr/local/gromacs/bin/:$PATH
> >>
> >>
> >> my "which gmx" shows the following installed path
> >>
> >>
> >> /usr/local/gromacs/bin//gmx
> >>
> >>
> >> I only able to obtain the gmx as every time by mentioning "source
> /usr/local/gromacs/bin/GMXRC"
> >>
> >>
> >> Please advice me how do make gmx to work in default in all terminal ?
> >> --
> >> Gromacs Users mailing list
> >>
> >> * Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> posting!
> >>
> >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
> >>
> >> * For (un)subscribe requests visit
> >> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> send a mail to gmx-users-request at gromacs.org.
>
>
>
> ------------------------------
> --
> Gromacs Users mailing list
>
> * Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> posting!
>
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
> * For (un)subscribe requests visit
> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> send a mail to gmx-users-request at gromacs.org.
>