April 2015 Archives by author

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Starting: Wed Apr 1 02:19:56 CEST 2015
Ending: Thu Apr 30 23:38:46 CEST 2015
Messages: 732

[gmx-users] Optimal GPU setup for workstation with Gromacs 5 Jingjie Yeo (IHPC)
[gmx-users] Optimal GPU setup for workstation with Gromacs 5 Jingjie Yeo (IHPC)
[gmx-users] Optimal GPU setup for workstation with Gromacs 5 Jingjie Yeo (IHPC)
[gmx-users] Optimal GPU setup for workstation with Gromacs 5 Jingjie Yeo (IHPC)
[gmx-users] Optimal GPU setup for workstation with Gromacs 5 Jingjie Yeo (IHPC)
[gmx-users] Optimal GPU setup for workstation with Gromacs 5 Jingjie Yeo (IHPC)
[gmx-users] gromacs.org_gmx-users Digest, Vol 131, Issue 130 Mark Abraham
[gmx-users] Partial Energy from Traj Mark Abraham
[gmx-users] Environmental variable setting for gmx 5.0.4 Mark Abraham
[gmx-users] Gromacs running on single PC with GPU? Mark Abraham
[gmx-users] Fwd: Is_trjcat_suitable_for_concatenating_REMD_trajectorie Mark Abraham
[gmx-users] Regarding groups making by make_ndx Mark Abraham
[gmx-users] DSSP with gmx 5.0.4 Mark Abraham
[gmx-users] GMX-compatible DNA coordinates Mark Abraham
[gmx-users] GMX-compatible DNA coordinates Mark Abraham
[gmx-users] Fwd: Is_trjcat_suitable_for_concatenating_REMD_trajectorie Mark Abraham
[gmx-users] GMX-compatible DNA coordinates Mark Abraham
[gmx-users] Replica Exchange: Threads vs MPI Mark Abraham
[gmx-users] Replica Exchange: Threads vs MPI Mark Abraham
[gmx-users] testing gromacs runs Mark Abraham
[gmx-users] trjconv_d errors Mark Abraham
[gmx-users] How to add a repulsive harmonic potential Mark Abraham
[gmx-users] Morse potential Mark Abraham
[gmx-users] How to add a repulsive harmonic potential Mark Abraham
[gmx-users] trjconv_d errors Mark Abraham
[gmx-users] Tipps for compiling gromacs 5 on BlueGene/Q Mark Abraham
[gmx-users] command line with gmx_mpi gangle for choosing the vector formed by coms of two planes Mark Abraham
[gmx-users] How to add a repulsive harmonic potential Mark Abraham
[gmx-users] A query Mark Abraham
[gmx-users] generating full atomic structure Mark Abraham
[gmx-users] Bootstrap error Mark Abraham
[gmx-users] Number of hardware threads does not match OpenMP Mark Abraham
[gmx-users] adding SR2++ to charm27 force field Mark Abraham
[gmx-users] adding SR2++ to charm27 force field Mark Abraham
[gmx-users] How to call an external LAPACK function in gromacs Mark Abraham
[gmx-users] Post-Processing on the REMD trj Mark Abraham
[gmx-users] Print Charmm27 parameters Mark Abraham
[gmx-users] Print Charmm27 parameters Mark Abraham
[gmx-users] adding SR2++ to charm27 force field Mark Abraham
[gmx-users] How to call an external LAPACK function in gromacs Mark Abraham
[gmx-users] How to call an external LAPACK function in gromacs Mark Abraham
[gmx-users] R-B dihedrals Mark Abraham
[gmx-users] problem with dihedral restraints in gromacs 5.0.4 Mark Abraham
[gmx-users] adding SR2++ to charm27 force field Mark Abraham
[gmx-users] adding SR2++ to charm27 force field Mark Abraham
[gmx-users] Mdrun and minimum image convention Mark Abraham
[gmx-users] GMX 5.0.4 gmx gangle to choose the normal vector of a plane Mark Abraham
[gmx-users] Mdrun and minimum image convention Mark Abraham
[gmx-users] install xmgrace on centos 6.5 Mark Abraham
[gmx-users] Disabling the pair-list update in REMD Mark Abraham
[gmx-users] GMX 5.0.4 gmx gangle to choose the normal vector of a plane Mark Abraham
[gmx-users] GROMACS 5.1-beta1 released Mark Abraham
[gmx-users] on regreressiontests Mark Abraham
[gmx-users] Gromacs 5.0.4 Installation error Mark Abraham
[gmx-users] using_gromacs_with_openmpi Mark Abraham
[gmx-users] assign disulfide bond Mark Abraham
[gmx-users] on the regression tests Mark Abraham
[gmx-users] how to name HIS in the input pdb for the pdb2gmx Mark Abraham
[gmx-users] Molecule specific explosion Mark Abraham
[gmx-users] assign disulfide bond Mark Abraham
[gmx-users] Simulations with Verlet scheme, virtual sites and heterogeneous systems Mark Abraham
[gmx-users] Molecule specific explosion Mark Abraham
[gmx-users] Number Error in XTC file Mark Abraham
[gmx-users] Number Error in XTC file Mark Abraham
[gmx-users] no error on missing cpt file Mark Abraham
[gmx-users] 35% Variability in Simulation Performance Mark Abraham
[gmx-users] How to use pdb2gmx be used to convert PRO to HYP? Mark Abraham
[gmx-users] trjconv: choosing name for a large number of output gro files Abhi Acharya
[gmx-users] Setting custom atoms in FF Alex
[gmx-users] grompp: unknown bond_atomtype Alex
[gmx-users] grompp: unknown bond_atomtype Alex
[gmx-users] Setting custom atoms in FF Alex
[gmx-users] grompp: unknown bond_atomtype Alex
[gmx-users] Setting custom atoms in FF Alex
[gmx-users] The largest charge group contains [GIANT CRAPTON] of atoms Alex
[gmx-users] The largest charge group contains [GIANT CRAPTON] of atoms Alex
[gmx-users] The largest charge group contains [GIANT CRAPTON] of atoms Alex
[gmx-users] GMX-compatible DNA coordinates Alex
[gmx-users] GMX-compatible DNA coordinates Alex
[gmx-users] GMX-compatible DNA coordinates Alex
[gmx-users] GMX-compatible DNA coordinates Alex
[gmx-users] GMX-compatible DNA coordinates Alex
[gmx-users] GMX-compatible DNA coordinates Alex
[gmx-users] GMX-compatible DNA coordinates Alex
[gmx-users] Gromacs on Nvidia 830M Alex
[gmx-users] mdp file for system without charges Alex
[gmx-users] error in grompp Alex
[gmx-users] POPE lipid from Tieleman's web site, the box of xy dimension will shrink during the simulation Alex
[gmx-users] POPE lipid from Tieleman's web site, the box of xy dimension will shrink during the simulation Alex
[gmx-users] CNT force field and simulation Alex
[gmx-users] hydrocarbons simulation Alex
[gmx-users] CNT force field and simulation Alex
[gmx-users] CNT force field and simulation Alex
[gmx-users] CNT force field and simulation Alex
[gmx-users] CNT force field and simulation Alex
[gmx-users] R-B dihedrals Alex
[gmx-users] R-B dihedrals Alex
[gmx-users] R-B dihedrals Alex
[gmx-users] R-B dihedrals Alex
[gmx-users] How to get the .gro file for MgO surface Alex
[gmx-users] Topology file for Fullerene with OPLS_AA force field Alex
[gmx-users] Constraints applied for keeping rigid in ND Alex
[gmx-users] Constraints applied for keeping rigid in ND Alex
[gmx-users] Constraints applied for keeping rigid in ND Alex
[gmx-users] Constraints applied for keeping rigid in ND Alex
[gmx-users] Constraints applied for keeping rigid in ND Alex
[gmx-users] Maximum Force constant for Position Restraints Alex
[gmx-users] Maximum Force constant for Position Restraints Alex
[gmx-users] Maximum Force constant for Position Restraints Alex
[gmx-users] Maximum Force constant for Position Restraints Alex
[gmx-users] Maximum Force constant for Position Restraints Alex
[gmx-users] help on Graphene Nano Sheets Alex
[gmx-users] Pull code Alex
[gmx-users] Pull code Alex
[gmx-users] help on Graphene Nano Sheets Alex
[gmx-users] help on Graphene Nano Sheets Alex
[gmx-users] Pull code Alex
[gmx-users] Pull code Alex
[gmx-users] Pull code Alex
[gmx-users] Problems in the modelling of interaction between peptide and copper Alex
[gmx-users] Problems in the modelling of interaction between peptide and copper Alex
[gmx-users] Problems in the modelling of interaction between peptide and copper Alex
[gmx-users] help on Graphene Nano Sheets Alex
[gmx-users] help on Graphene Nano Sheets Alex
[gmx-users] pdb2gmx and periodic molecule Alex
[gmx-users] pdb2gmx and periodic molecule Alex
[gmx-users] pdb2gmx and protonated states of the residues Alex
[gmx-users] pdb2gmx and periodic molecule Alex
[gmx-users] pdb2gmx and periodic molecule Alex
[gmx-users] pdb2gmx and periodic molecule Alex
[gmx-users] Epsilon-rf Alex
[gmx-users] Epsilon-rf Alex
[gmx-users] Epsilon-rf Alex
[gmx-users] Epsilon-rf Alex
[gmx-users] Epsilon-rf Alex
[gmx-users] Supercritical CO2 Alex
[gmx-users] Supercritical CO2 Alex
[gmx-users] FW: topology file from glycam/gaff to gromacs Rasha Alqus
[gmx-users] simulating liquid SO2 (Sulphur dioxide) Jashimuddin Ashraf
[gmx-users] Gromacs on Nvidia 830M Jashimuddin Ashraf
[gmx-users] Gromacs on Nvidia 830M Jashimuddin Ashraf
[gmx-users] about GPU acceleration BIRD
[gmx-users] Protein fragments during production simulation SAPNA BORAH
[gmx-users] Protein fragments during production simulation SAPNA BORAH
[gmx-users] Protein fragments during production simulation SAPNA BORAH
[gmx-users] Fe2+ non bonded parameters for AMBER Nataraj Balakrishnan
[gmx-users] Gromacs 5.0.4 Installation error Sarath Kumar Baskaran
[gmx-users] CNT force field Pierre Bertin
[gmx-users] CNT force field and simulation Pierre Bertin
[gmx-users] CNT force field and simulation Pierre Bertin
[gmx-users] gromacs installation fatal errors Brett
[gmx-users] on the regression tests Brett
[gmx-users] on regreressiontests Brett
[gmx-users] pdb2gmx on HID HIE and HIP Brett
[gmx-users] pdb2gmx and the terminal residue Brett
[gmx-users] pdb2gmx and the Glu residue Brett
[gmx-users] pdb2gmx and protonated states of the residues Brett
[gmx-users] how to name HIS in the input pdb for the pdb2gmx Brett
[gmx-users] how to name HIS in the input pdb for the pdb2gmx Brett
[gmx-users] on the MDP options Brett
[gmx-users] a question related to gmx energy minimization Brett
[gmx-users] a question related to gmx energy minimization Brett
[gmx-users] on the xmgrac for gromacs Brett
[gmx-users] on the xmgrac for gromacs Brett
[gmx-users] a question related to gmx energy minimization Brett
[gmx-users] the relationship between mdp file and the force field Brett
[gmx-users] the relationship between mdp file and the force field Brett
[gmx-users] on rlist Brett
[gmx-users] MPI command For MD Brett
[gmx-users] append does not work for me Michael Brunsteiner
[gmx-users] append does not work for me Michael Brunsteiner
[gmx-users] help on Graphene Nano Sheets Marcello Cammarata
[gmx-users] help on Graphene Nano Sheets Marcello Cammarata
[gmx-users] help on Graphene Nano Sheets Marcello Cammarata
[gmx-users] help on Graphene Nano Sheets Marcello Cammarata
[gmx-users] help on Graphene Nano Sheets Marcello Cammarata
[gmx-users] help on Graphene Nano Sheets Marcello Cammarata
[gmx-users] Pi stacking Debayan Chakraborty
[gmx-users] pi stacking Debayan Chakraborty
[gmx-users] Topology error Abid Channa
[gmx-users] Print Charmm27 parameters Stavros Chatzieleftheriou
[gmx-users] Fe2+ non bonded parameters for AMBER Raj D
[gmx-users] Fe2+ non bonded parameters for AMBER Raj D
[gmx-users] error in grompp if used TIP4p-Ew water at pdb2gmx Raj D
[gmx-users] error in grompp if used TIP4p-Ew water at pdb2gmx Raj D
[gmx-users] CUDA kit for Fedora 21 Raj D
[gmx-users] g_cluster (gromos method) creates clusters with members having RMSD greater than the cutoff to the cluster "middle" João M. Damas
[gmx-users] Query- RMSD Priya Das
[gmx-users] Query- RMSD Priya Das
[gmx-users] Query- RMSD Priya Das
[gmx-users] A query Priya Das
[gmx-users] A query Priya Das
[gmx-users] gromacs.org_gmx-users Digest, Vol 131, Issue 130 Satyabrata Das
[gmx-users] How can I determine how Gromacs was compiled? Andrew DeYoung
[gmx-users] Fluorine Gromos LJ parameters Marcelo Depólo
[gmx-users] simulating liquid SO2 (Sulphur dioxide) Marcelo Depólo
[gmx-users] A query Marcelo Depólo
[gmx-users] Position restraint for ions Marcelo Depólo
[gmx-users] Position restraint for ions Marcelo Depólo
[gmx-users] Position restraint for ions Marcelo Depólo
[gmx-users] Position restraint for ions Marcelo Depólo
[gmx-users] Maximum Force constant for Position Restraints Marcelo Depólo
[gmx-users] Maximum Force constant for Position Restraints Marcelo Depólo
[gmx-users] Segmentation fault in mdrun nvt Carlos Javier Almeciga Diaz
[gmx-users] Segmentation fault in mdrun nvt (Smith, Micholas D.) Carlos Javier Almeciga Diaz
[gmx-users] Fatal error: Atom type Zn2+ (residue ZN) not found in atomtype database Anurag Dobhal
[gmx-users] error in grompp Anurag Dobhal
[gmx-users] Command-Line Options for Cray XK7 Nodes Mitchell Dorrell
[gmx-users] 35% Variability in Simulation Performance Mitchell Dorrell
[gmx-users] 35% Variability in Simulation Performance Mitchell Dorrell
[gmx-users] 35% Variability in Simulation Performance Mitchell Dorrell
[gmx-users] 35% Variability in Simulation Performance Mitchell Dorrell
[gmx-users] simulate a multimer with one component has covalently attached prosthetic group Debajyoti Dutta
[gmx-users] GROMACS fatal error for PME rank 1 are more than 2/3 times Debajyoti Dutta
[gmx-users] G_rmsf, reference structure Eerden, van, F.J.
[gmx-users] G_rmsf, reference structur Eerden, van, F.J.
[gmx-users] G_RMSF Eerden, van, F.J.
[gmx-users] fatal error while running gmxpbsa0.sh Mahboobeh Eslami
[gmx-users] trjconv for cutting the trajectory in small subtrajectories Mahboobeh Eslami
[gmx-users] trjconv for cutting the trajectory in small subtrajectories Mahboobeh Eslami
[gmx-users] trjconv for cutting the trajectory in small subtrajectories Mahboobeh Eslami
[gmx-users] trjcat with settime option using command line Rebeca García Fandiño
[gmx-users] lost information box after g_cluster Rebeca García Fandiño
[gmx-users] value for epsilon_rf in a vacuum simulation Rebeca García Fandiño
[gmx-users] testing gromacs runs Ayesha Fatima
[gmx-users] error in umbrella sampling tutorial Ayesha Fatima
[gmx-users] CUDA fails to allocate memory to mdrun Akshay Kumar Ganguly
[gmx-users] generating full atomic structure Victor Rosas Garcia
[gmx-users] MD simulation of metalloprotein Biplab Ghosh
[gmx-users] Simulations with Verlet scheme, virtual sites and heterogeneous systems Ivan Gladich
[gmx-users] Simulations with Verlet scheme, virtual sites and heterogeneous systems Ivan Gladich
[gmx-users] Saxs guided MD Tiago Gomes
[gmx-users] Using thermostats to create temperature gradient in system Agnivo Gosai
[gmx-users] Using thermostats to create temperature gradient in system Agnivo Gosai
[gmx-users] Using thermostats to create temperature gradient in system Agnivo Gosai
[gmx-users] Using thermostats to create temperature gradient in system Agnivo Gosai
[gmx-users] Using thermostats to create temperature gradient in system Agnivo Gosai
[gmx-users] Using thermostats to create temperature gradient in system Agnivo Gosai
[gmx-users] Using thermostats to create temperature gradient in system Agnivo Gosai
[gmx-users] using_gromacs_with_openmpi Hossein H
[gmx-users] using_gromacs_with_openmpi Hossein H
[gmx-users] using_gromacs_with_openmpi Hossein H
[gmx-users] using_gromacs_with_openmpi Hossein H
[gmx-users] Heavy Hydrogens Matthew Harrigan
[gmx-users] Heavy Hydrogens Matthew Harrigan
[gmx-users] gmx_simd_check_and_reset_overflow undefined for sparc64 hpc ace Matthew Harrigan
[gmx-users] Charge of the system Emran Heshmati
[gmx-users] Temperature in Non-equilibrium MD simulation. Ho, Tuan A.
[gmx-users] Temperature in Non-equilibrium MD simulation. Ho, Tuan A.
[gmx-users] assign disulfide bond HongTham
[gmx-users] Immediate Postdoctoral Position Opening In Dr. Khaled Barakat’s Lab, Faculty Of Pharmacy, University Of Alberta. Marawan Hussien
[gmx-users] Immediate PhD Opening Computational Structural Biology Of Membrane Proteins Marawan Hussien
[gmx-users] Immediate PhD Opening Computational Structural Biology Of Membrane Proteins Marawan Hussien
[gmx-users] genbox command in gromacs-5.0.1 Kalyanashis Jana
[gmx-users] genbox command in gromacs-5.0.1 Kalyanashis Jana
[gmx-users] Energy minimization error for electroporation simulation of DPPC membrane Abhijit Jassem
[gmx-users] membrane protein simulation Mostafa Javaheri
[gmx-users] membrane protein simulation Mostafa Javaheri
[gmx-users] Optimal GPU setup for workstation with Gromacs 5 Jingjie
[gmx-users] Topology file for Fullerene with OPLS_AA force field abhijit Kayal
[gmx-users] error in grompp if used TIP4p-Ew water at pdb2gmx abhijit Kayal
[gmx-users] error in grompp if used TIP4p-Ew water at pdb2gmx abhijit Kayal
[gmx-users] help on Graphene Nano Sheets abhijit Kayal
[gmx-users] on the xmgrac for gromacs abhijit Kayal
[gmx-users] g_wham error in umbrella simulation Kortzak, Daniel
[gmx-users] Epsilon-rf Maryam Kowsar
[gmx-users] Epsilon-rf Maryam Kowsar
[gmx-users] Environmental variable setting for gmx 5.0.4 Peter Kroon
[gmx-users] contribution of inter-molecular distance restraints to the virial Alexander Kuhn
[gmx-users] entropy calculation Praveen Kumar
[gmx-users] mdp file for system without charges Kutzner, Carsten
[gmx-users] help: Gromacs Kutzner, Carsten
[gmx-users] ftp.gromacs.org not working now Kutzner, Carsten
[gmx-users] Optimal GPU setup for workstation with Gromacs 5 Kutzner, Carsten
[gmx-users] Optimal GPU setup for workstation with Gromacs 5 Kutzner, Carsten
[gmx-users] Optimal GPU setup for workstation with Gromacs 5 Kutzner, Carsten
[gmx-users] Optimal GPU setup for workstation with Gromacs 5 Kutzner, Carsten
[gmx-users] no error on missing cpt file Kutzner, Carsten
[gmx-users] Running Multiple simulation in single PC. Kutzner, Carsten
[gmx-users] Running Multiple simulation in single PC. Kutzner, Carsten
[gmx-users] 35% Variability in Simulation Performance Kutzner, Carsten
[gmx-users] Running Multiple simulation in single PC Kutzner, Carsten
[gmx-users] error in umbrella sampling tutorial HANNIBAL LECTER
[gmx-users] grompp: unknown bond_atomtype Justin Lemkul
[gmx-users] File input/output error: algorithm_parameters.mdp Justin Lemkul
[gmx-users] Setting custom atoms in FF Justin Lemkul
[gmx-users] ATB Justin Lemkul
[gmx-users] simulate a multimer with one component has covalently attached prosthetic group Justin Lemkul
[gmx-users] grompp: unknown bond_atomtype Justin Lemkul
[gmx-users] Setting custom atoms in FF Justin Lemkul
[gmx-users] where are the forces? Justin Lemkul
[gmx-users] The largest charge group contains [GIANT CRAPTON] of atoms Justin Lemkul
[gmx-users] pi-stacking energy between carbon nanotube and nucleic acids Justin Lemkul
[gmx-users] The largest charge group contains [GIANT CRAPTON] of atoms Justin Lemkul
[gmx-users] GROMACS fatal error for PME rank 1 are more than 2/3 times Justin Lemkul
[gmx-users] there wasn't md_0_1.xtc file Justin Lemkul
[gmx-users] simultaneous runs Justin Lemkul
[gmx-users] Morse potential Justin Lemkul
[gmx-users] Query- RMSD Justin Lemkul
[gmx-users] pdb2gmx error Justin Lemkul
[gmx-users] umbrella sampling tutorial Justin Lemkul
[gmx-users] Topology error Justin Lemkul
[gmx-users] Syntax error -File dppc.itp line 1 Justin Lemkul
[gmx-users] Is it possible to generate lipid.itp with Charmm36 ff? Justin Lemkul
[gmx-users] Is it possible to generate lipid.itp with Charmm36 ff? Justin Lemkul
[gmx-users] Is it possible to generate lipid.itp with Charmm36 ff? Justin Lemkul
[gmx-users] Is it possible to generate lipid.itp with Charmm36 ff? Justin Lemkul
[gmx-users] genbox command in gromacs-5.0.1 Justin Lemkul
[gmx-users] Using gmx 5.0.4 made traj to analyze in gromac 4.6 version Justin Lemkul
[gmx-users] Forced adsoprtion and desorption of a protein on a surface Justin Lemkul
[gmx-users] problem with dihedral restraints in gromacs 5.0.4 Justin Lemkul
[gmx-users] Log files Justin Lemkul
[gmx-users] hydrocarbons simulation Justin Lemkul
[gmx-users] Print Charmm27 parameters Justin Lemkul
[gmx-users] Installation Error Justin Lemkul
[gmx-users] POPE lipid from Tieleman's web site, the box of xy dimension will shrink during the simulation Justin Lemkul
[gmx-users] How to add a repulsive harmonic potential Justin Lemkul
[gmx-users] In-Vacuo ligand only equilibration Justin Lemkul
[gmx-users] A simple question Justin Lemkul
[gmx-users] refcoord-scaling without pressure coupling Justin Lemkul
[gmx-users] In-Vacuo ligand only equilibration (Iris Nira Smith) Justin Lemkul
[gmx-users] How to add a repulsive harmonic potential Justin Lemkul
[gmx-users] adding SR2++ to charm27 force field Justin Lemkul
[gmx-users] Position restraint for ions Justin Lemkul
[gmx-users] Position restraint for ions Justin Lemkul
[gmx-users] Position restraint for ions Justin Lemkul
[gmx-users] R-B dihedrals Justin Lemkul
[gmx-users] How to get the .gro file for MgO surface Justin Lemkul
[gmx-users] Fe2+ non bonded parameters for AMBER Justin Lemkul
[gmx-users] Pi stacking Justin Lemkul
[gmx-users] how to make average hbond plot in gromacs using xmgrace Justin Lemkul
[gmx-users] Pi stacking Justin Lemkul
[gmx-users] Fe2+ non bonded parameters for AMBER Justin Lemkul
[gmx-users] adding SR2++ to charm27 force field Justin Lemkul
[gmx-users] Fe2+ non bonded parameters for AMBER Justin Lemkul
[gmx-users] pi stacking Justin Lemkul
[gmx-users] trjcat with settime option using command line Justin Lemkul
[gmx-users] adding SR2++ to charm27 force field Justin Lemkul
[gmx-users] force field problem.... Justin Lemkul
[gmx-users] Pi stacking Justin Lemkul
[gmx-users] force field problem.... Justin Lemkul
[gmx-users] Convert-tpr pbc problem for membrane protein Justin Lemkul
[gmx-users] force field problem.... Justin Lemkul
[gmx-users] adding SR2++ to charm27 force field Justin Lemkul
[gmx-users] Convert-tpr pbc problem for membrane protein Justin Lemkul
[gmx-users] Last question: why am I not generating nvt.gro in the KALP15 in DPPC tutorial like last time? Justin Lemkul
[gmx-users] Can't find the reference in hbond calculation between the map and the index file Justin Lemkul
[gmx-users] Extraction of the pdb data from the g_shame diagrams Justin Lemkul
[gmx-users] CH3CN solvents breaking the periodic box Justin Lemkul
[gmx-users] increase the concentration of protein or drug Justin Lemkul
[gmx-users] g_wham error in umbrella simulation Justin Lemkul
[gmx-users] Latest CHARMM36 + CGenFF 3.0.1 files Justin Lemkul
[gmx-users] Steered MD simulation of drug molecules across the plasma membrane in gromacs 5.0.4 Justin Lemkul
[gmx-users] append does not work for me Justin Lemkul
[gmx-users] Extraction of the pdb data from the g_shame diagrams Justin Lemkul
[gmx-users] mail About LJ obtained by g_energy Justin Lemkul
[gmx-users] g_wham error in umbrella simulation Justin Lemkul
[gmx-users] lost information box after g_cluster Justin Lemkul
[gmx-users] Order Parameters for alkyl chain Justin Lemkul
[gmx-users] Umbrella Sampling Error in Gromacs 5.0 Justin Lemkul
[gmx-users] using_gromacs_with_openmpi Justin Lemkul
[gmx-users] membrane protein simulation Justin Lemkul
[gmx-users] using_gromacs_with_openmpi Justin Lemkul
[gmx-users] append does not work for me Justin Lemkul
[gmx-users] using_gromacs_with_openmpi Justin Lemkul
[gmx-users] Pull code Justin Lemkul
[gmx-users] Umbrella Sampling Error in Gromacs 5.0 Justin Lemkul
[gmx-users] help on Graphene Nano Sheets Justin Lemkul
[gmx-users] Pull code Justin Lemkul
[gmx-users] Pull code Justin Lemkul
[gmx-users] Pull code Justin Lemkul
[gmx-users] Pull code Justin Lemkul
[gmx-users] gromacs installation fatal errors Justin Lemkul
[gmx-users] Steered MD simulation of drug molecules across the plasma membrane in gromacs 5.0.4 Justin Lemkul
[gmx-users] help on Graphene Nano Sheets Justin Lemkul
[gmx-users] Segmentation fault (core dumped) during EM Justin Lemkul
[gmx-users] error in umbrella sampling tutorial Justin Lemkul
[gmx-users] Umbrella Sampling Error in Gromacs 5.0 Justin Lemkul
[gmx-users] Heavy Hydrogens Justin Lemkul
[gmx-users] gromacs.org_gmx-users Digest, Vol 132, Issue 117 Justin Lemkul
[gmx-users] trjconv for cutting the trajectory in small subtrajectories Justin Lemkul
[gmx-users] pdb2gmx on HID HIE and HIP Justin Lemkul
[gmx-users] About Analsysi tool Justin Lemkul
[gmx-users] pdb2gmx and periodic molecule Justin Lemkul
[gmx-users] trjconv for cutting the trajectory in small subtrajectories Justin Lemkul
[gmx-users] pdb2gmx and the Glu residue Justin Lemkul
[gmx-users] pdb2gmx and the terminal residue Justin Lemkul
[gmx-users] mail about g_energy parameter Justin Lemkul
[gmx-users] Constraints and Energy Minimization Justin Lemkul
[gmx-users] Constraints and Energy Minimization Justin Lemkul
[gmx-users] how to name HIS in the input pdb for the pdb2gmx Justin Lemkul
[gmx-users] pdb2gmx and periodic molecule Justin Lemkul
[gmx-users] a question related to gmx energy minimization Justin Lemkul
[gmx-users] free energy Justin Lemkul
[gmx-users] Constraints and Energy Minimization Justin Lemkul
[gmx-users] a question related to gmx energy minimization Justin Lemkul
[gmx-users] Using thermostats to create temperature gradient in system Justin Lemkul
[gmx-users] Using thermostats to create temperature gradient in system Justin Lemkul
[gmx-users] Using thermostats to create temperature gradient in system Justin Lemkul
[gmx-users] the relationship between mdp file and the force field Justin Lemkul
[gmx-users] difference of calculation time between the numbers of fep-lambdas values Justin Lemkul
[gmx-users] difference of calculation time between the numbers of fep-lambdas values Justin Lemkul
[gmx-users] the relationship between mdp file and the force field Justin Lemkul
[gmx-users] difference of calculation time between the numbers of fep-lambdas values Justin Lemkul
[gmx-users] on rlist Justin Lemkul
[gmx-users] MD simulation of metalloprotein Justin Lemkul
[gmx-users] Energy minimization error for electroporation simulation of DPPC membrane Justin Lemkul
[gmx-users] Charge of the system Justin Lemkul
[gmx-users] MPI command For MD Justin Lemkul
[gmx-users] PMF calculation by umbrella sampling simulations Justin Lemkul
[gmx-users] OPLS force field issue Justin Lemkul
[gmx-users] Mail regarding g_enemat tool Justin Lemkul
[gmx-users] How to use pdb2gmx be used to convert PRO to HYP? Justin Lemkul
[gmx-users] Protein fragments during production simulation Justin Lemkul
[gmx-users] OPLS force field issue Justin Lemkul
[gmx-users] value for epsilon_rf in a vacuum simulation Justin Lemkul
[gmx-users] PMF calculation by umbrella sampling simulations Justin Lemkul
[gmx-users] OPLS force field issue Mary Less
[gmx-users] KALP15 in DPPC: lipid packing: deleting and shrinking lipids: why are the number of lipids not decreasing? Thomas Lipscomb
[gmx-users] KALP15 in DPPC: NPT: File input/output error: nvt.gro Thomas Lipscomb
[gmx-users] Last question: why am I not generating nvt.gro in the KALP15 in DPPC tutorial like last time? Thomas Lipscomb
[gmx-users] Is it possible to generate lipid.itp with Charmm36 ff? Yunlong Liu
[gmx-users] Is it possible to generate lipid.itp with Charmm36 ff? Yunlong Liu
[gmx-users] Is it possible to generate lipid.itp with Charmm36 ff? Yunlong Liu
[gmx-users] Is it possible to generate lipid.itp with Charmm36 ff? Yunlong Liu
[gmx-users] difference of calculation time between the numbers of fep-lambdas values Hannes Loeffler
[gmx-users] difference of calculation time between the numbers of fep-lambdas values Hannes Loeffler
[gmx-users] gromacs.org_gmx-users Digest, Vol 132, Issue 117 Simon Longela
[gmx-users] Forced adsoprtion and desorption of a protein on a surface James Lord
[gmx-users] Forced adsoprtion and desorption of a protein on a surface James Lord
[gmx-users] trjconv for cutting the trajectory in small subtrajectories James Lord
[gmx-users] refcoord-scaling without pressure coupling Johnny Lu
[gmx-users] refcoord-scaling without pressure coupling Johnny Lu
[gmx-users] PMF calculation by umbrella sampling simulations MPI
[gmx-users] PMF calculation by umbrella sampling simulations MPI
[gmx-users] Disabling the pair-list update in REMD Mateusz Marianski
[gmx-users] Disabling the pair-list update in REMD Mateusz Marianski
[gmx-users] error while executing do_dssp program Erik Marklund
[gmx-users] Checking the existence of a hydrogen bond network Erik Marklund
[gmx-users] end to end normalized vector Erik Marklund
[gmx-users] OPLS force field issue Mary
[gmx-users] angle distribution between a vector and Z axis Marzieh Saeedi Masineh
[gmx-users] angle distribution between a vector and Z axis Marzieh Saeedi Masineh
[gmx-users] angle distribution between a vector and Z axis Marzieh Saeedi Masineh
[gmx-users] SWCN and graphene topology and coordinate Mass
[gmx-users] Checking the existence of a hydrogen bond network Ebert Maximilian
[gmx-users] Checking the existence of a hydrogen bond network Ebert Maximilian
[gmx-users] Can't find the reference in hbond calculation between the map and the index file Ebert Maximilian
[gmx-users] Can't find the reference in hbond calculation between the map and the index file Ebert Maximilian
[gmx-users] crashed runs Bahare Meftahi
[gmx-users] (no subject) Bahare Meftahi
[gmx-users] trjconv: choosing name for a large number of output gro files Athina Meletiou
[gmx-users] pdb2gmx error Sneha Menon
[gmx-users] calculating free energy Felipe Merino
[gmx-users] System size increases and exceeds unit cell dimensions during simulation. Tushar Ranjan Moharana
[gmx-users] periodic boundary conditions pbc=xyz Tushar Ranjan Moharana
[gmx-users] Topology error Tushar Ranjan Moharana
[gmx-users] Pi stacking Tushar Ranjan Moharana
[gmx-users] Pi stacking Tushar Ranjan Moharana
[gmx-users] Segmentation fault (core dumped) during EM Tushar Ranjan Moharana
[gmx-users] Log files Lucas Dadalt Morero
[gmx-users] Clusters Lucas Dadalt Morero
[gmx-users] Clusters Lucas Dadalt Morero
[gmx-users] Clusters Lucas Dadalt Morero
[gmx-users] Tetrahydrofuran OPLS-AA forcefield André Farias de Moura
[gmx-users] analysis Elmira Naghdi
[gmx-users] crashed runs Christopher Neale
[gmx-users] (no subject) Christopher Neale
[gmx-users] angle distribution between a vector and Z axis Christopher Neale
[gmx-users] calculating free energy Christopher Neale
[gmx-users] angle distribution between a vector and Z axis Christopher Neale
[gmx-users] Steered MD simulation of drug molecules across the plasma membrane in gromacs 5.0.4 Christopher Neale
[gmx-users] Steered MD simulation of drug molecules across the plasma membrane in gromacs 5.0.4 Christopher Neale
[gmx-users] Steered MD simulation of drug molecules across the plasma membrane in gromacs 5.0.4 Christopher Neale
[gmx-users] Steered MD simulation of drug molecules across the plasma membrane in gromacs 5.0.4 Christopher Neale
[gmx-users] GMX-compatible DNA coordinates Mauricio Esguerra Neira
[gmx-users] Gromacs on Nvidia 830M B P
[gmx-users] Gromacs on Nvidia 830M B P
[gmx-users] Gromacs on Nvidia 830M B P
[gmx-users] all in one pc for MD simulation calculations Atila Petrosian
[gmx-users] POPE lipid from Tieleman's web site, the box of xy dimension will shrink during the simulation Thomas Piggot
[gmx-users] Variations of angles in a triclinic box Antonio Pizzirusso
[gmx-users] Variations of angles in a triclinic box Antonio Pizzirusso
[gmx-users] Fwd: Is_trjcat_suitable_for_concatenating_REMD_trajectorie NISHA Prakash
[gmx-users] Fwd: Is_trjcat_suitable_for_concatenating_REMD_trajectorie NISHA Prakash
[gmx-users] Fwd: Is_trjcat_suitable_for_concatenating_REMD_trajectorie NISHA Prakash
[gmx-users] Fwd: Is_trjcat_suitable_for_concatenating_REMD_trajectorie NISHA Prakash
[gmx-users] Gromacs on Nvidia 830M Szilárd Páll
[gmx-users] Gromacs on Nvidia 830M Szilárd Páll
[gmx-users] about GPU acceleration Szilárd Páll
[gmx-users] Clusters Szilárd Páll
[gmx-users] Number of hardware threads does not match OpenMP Szilárd Páll
[gmx-users] Clusters Szilárd Páll
[gmx-users] How can I determine how Gromacs was compiled? Szilárd Páll
[gmx-users] How can I determine how Gromacs was compiled? Szilárd Páll
[gmx-users] Environmental variable setting for gmx 5.0.4 RJ
[gmx-users] Environmental variable setting for gmx 5.0.4 RJ
[gmx-users] Gromacs running on single PC with GPU? RJ
[gmx-users] DSSP with gmx 5.0.4 RJ
[gmx-users] Using gmx 5.0.4 made traj to analyze in gromac 4.6 version RJ
[gmx-users] Running Multiple simulation in single PC. RJ
[gmx-users] Running Multiple simulation in single PC RJ
[gmx-users] Fatal error: Atom type Zn2+ (residue ZN) not found in atomtype database Nixon Raj
[gmx-users] ftp.gromacs.org not working now Vytautas Rakeviius
[gmx-users] making bilayers including a lipid-like molecule Mohsen Ramezanpour
[gmx-users] making bilayers including a lipid-like molecule Mohsen Ramezanpour
[gmx-users] Regarding Topolbuild1_3 Ray, Bruce D
[gmx-users] Number of hardware threads does not match OpenMP Dries Van Rompaey
[gmx-users] Effect of hardware threads mismatch on simulation Dries Van Rompaey
[gmx-users] Number of hardware threads does not match OpenMP Dries Van Rompaey
[gmx-users] force field problem.... Kamalesh Roy
[gmx-users] force field problem.... Kamalesh Roy
[gmx-users] CH3CN solvents breaking the periodic box DEBASHIS SAHU
[gmx-users] CH3CN solvents breaking the periodic box Debashis Sahu
[gmx-users] Mdrun and minimum image convention Catarina A. Carvalheda dos Santos
[gmx-users] Mdrun and minimum image convention Catarina A. Carvalheda dos Santos
[gmx-users] Mdrun and minimum image convention Catarina A. Carvalheda dos Santos
[gmx-users] Replica Exchange: Threads vs MPI Steve Seibold
[gmx-users] Regarding Topolbuild1_3 Deepali Sharma
[gmx-users] Error OPLSAA forcefield Deepali Sharma
[gmx-users] problem with dihedral restraints in gromacs 5.0.4 Agnieszka Slowicka
[gmx-users] problem with dihedral restraints in gromacs 5.0.4 Agnieszka Slowicka
[gmx-users] In-Vacuo ligand only equilibration Iris Nira Smith
[gmx-users] In-Vacuo ligand only equilibration (Iris Nira Smith) Iris Nira Smith
[gmx-users] Is it possible to generate lipid.itp with Charmm36 ff? Smith, Micholas D.
[gmx-users] Water TIP4Pnew and topology file Smith, Micholas D.
[gmx-users] Segmentation fault in mdrun nvt Smith, Micholas D.
[gmx-users] A simple question Smith, Micholas D.
[gmx-users] Topology file for Fullerene with OPLS_AA force field Smith, Micholas D.
[gmx-users] end to end normalized vector Smith, Micholas D.
[gmx-users] Constraints and Energy Minimization Eric Smoll
[gmx-users] Constraints and Energy Minimization Eric Smoll
[gmx-users] Molecule specific explosion Eric Smoll
[gmx-users] Constraints and Energy Minimization Eric Smoll
[gmx-users] Molecule specific explosion Eric Smoll
[gmx-users] where are the forces? Albert Solernou
[gmx-users] where are the forces? Albert Solernou
[gmx-users] making bilayers including a lipid-like molecule Björn Sommer
[gmx-users] Tetrahydrofuran OPLS-AA forcefield David van der Spoel
[gmx-users] Maximum Force constant for Position Restraints David van der Spoel
[gmx-users] all in one pc for MD simulation calculations Dan Sponseller
[gmx-users] Extraction of the pdb data from the g_shame diagrams James Starlight
[gmx-users] Extraction of the pdb data from the g_shame diagrams James Starlight
[gmx-users] mdp file for system without charges Mikhail Stukan
[gmx-users] do_dssp for coarse-grained trajectory Sandhyaa Subramanian
[gmx-users] do_dssp for coarse-grained trajectory Sandhyaa Subramanian
[gmx-users] Using thermostats to create temperature gradient in system Suzen, Mehmet
[gmx-users] Using thermostats to create temperature gradient in system Suzen, Mehmet
[gmx-users] periodic boundary conditions pbc=xyz Ming Tang
[gmx-users] periodic boundary conditions pbc=xyz Ming Tang
[gmx-users] umbrella sampling tutorial Ming Tang
[gmx-users] generating full atomic structure Ming Tang
[gmx-users] how to modify the files in the force field fold of Gromacs Ming Tang
[gmx-users] generating full atomic structure Ming Tang
[gmx-users] adding SR2++ to charm27 force field Ming Tang
[gmx-users] adding SR2++ to charm27 force field Ming Tang
[gmx-users] adding SR2++ to charm27 force field Ming Tang
[gmx-users] adding SR2++ to charm27 force field Ming Tang
[gmx-users] adding SR2++ to charm27 force field Ming Tang
[gmx-users] force field problem.... Ming Tang
[gmx-users] adding SR2++ to charm27 force field Ming Tang
[gmx-users] adding SR2++ to charm27 force field Ming Tang
[gmx-users] adding SR2++ to charm27 force field Ming Tang
[gmx-users] g_wham error in umbrella simulation Ming Tang
[gmx-users] g_wham error in umbrella simulation Ming Tang
[gmx-users] g_wham error in umbrella simulation Ming Tang
[gmx-users] Pull code Ming Tang
[gmx-users] Pull code Ming Tang
[gmx-users] Pull code Ming Tang
[gmx-users] Pull code Ming Tang
[gmx-users] Problems in the modelling of interaction between peptide and copper Ming Tang
[gmx-users] g_wham error in umbrella simulation Ming Tang
[gmx-users] trjconv for cutting the trajectory in small subtrajectories Ming Tang
[gmx-users] Pull code Ming Tang
[gmx-users] Generating topology file containing HYP Ming Tang
[gmx-users] Generating topology file containing HYP Ming Tang
[gmx-users] How to use pdb2gmx be used to convert PRO to HYP? Ming Tang
[gmx-users] Unexpected trjconv -nojump behaviour Trayder Thomas
[gmx-users] Umbrella Sampling Error in Gromacs 5.0 Jianhui Tian
[gmx-users] Umbrella Sampling Error in Gromacs 5.0 Jianhui Tian
[gmx-users] Umbrella Sampling Error in Gromacs 5.0 Jianhui Tian
[gmx-users] Order Parameters for alkyl chain Sylvester Tumusiime
[gmx-users] Implicit solvent for protein-DNA in GROMACS? Timofey Tyugashev
[gmx-users] Water TIP4Pnew and topology file Jennifer Vo
[gmx-users] Water TIP4Pnew and topology file Jennifer Vo
[gmx-users] Number Error in XTC file Jennifer Vo
[gmx-users] Number Error in XTC file Jennifer Vo
[gmx-users] Tipps for compiling gromacs 5 on BlueGene/Q Soren Wacker
[gmx-users] How can I determine how Gromacs was compiled? Mirco Wahab
[gmx-users] Unexpected trjconv -nojump behaviour Tsjerk Wassenaar
[gmx-users] Fwd: A doubt from topology creation in Gromacs Tsjerk Wassenaar
[gmx-users] G_rmsf, reference structure Tsjerk Wassenaar
[gmx-users] GMX-compatible DNA coordinates Tsjerk Wassenaar
[gmx-users] GMX-compatible DNA coordinates Tsjerk Wassenaar
[gmx-users] GMX-compatible DNA coordinates Tsjerk Wassenaar
[gmx-users] the study of concentration effect in gromacs Tsjerk Wassenaar
[gmx-users] the study of concentration effect in gromacs Tsjerk Wassenaar
[gmx-users] periodic boundary conditions pbc=xyz Tsjerk Wassenaar
[gmx-users] G_rmsf, reference structur Tsjerk Wassenaar
[gmx-users] Query- RMSD Tsjerk Wassenaar
[gmx-users] Query- RMSD Tsjerk Wassenaar
[gmx-users] g_anaeig Error! Tsjerk Wassenaar
[gmx-users] A query Tsjerk Wassenaar
[gmx-users] Can NAMD simulation solve the problem of coordinate clash in a structural model? Tsjerk Wassenaar
[gmx-users] how to modify the files in the force field fold of Gromacs Tsjerk Wassenaar
[gmx-users] R-B dihedrals Tsjerk Wassenaar
[gmx-users] Mdrun and minimum image convention Tsjerk Wassenaar
[gmx-users] do_dssp for coarse-grained trajectory Tsjerk Wassenaar
[gmx-users] Variations of angles in a triclinic box Tsjerk Wassenaar
[gmx-users] membrane protein simulation Tsjerk Wassenaar
[gmx-users] pdb2gmx and periodic molecule Tsjerk Wassenaar
[gmx-users] a question related to gmx energy minimization Tsjerk Wassenaar
[gmx-users] Protein fragments during production simulation Tsjerk Wassenaar
[gmx-users] NMA with gromacs trajectory Tsjerk Wassenaar
[gmx-users] Supercritical CO2 Jarrett Lee Wise
[gmx-users] .xtc to DCD conversion Kester Wong
[gmx-users] command line with gmx_mpi gangle for choosing the vector formed by coms of two planes LIANG Xujun
[gmx-users] command line with gmx_mpi gangle for choosing the vector formed by coms of two planes LIANG Xujun
[gmx-users] GMX 5.0.4 gmx gangle to choose the normal vector of a plane LIANG Xujun
[gmx-users] GMX 5.0.4 gmx gangle to choose the normal vector of a plane LIANG Xujun
[gmx-users] gmx gangle in the development version of gromacs LIANG Xujun
[gmx-users] gmx gangle in the development version of gromacs LIANG Xujun
[gmx-users] File input/output error: algorithm_parameters.mdp Poncho Arvayo Zatarain
[gmx-users] Syntax error -File dppc.itp line 1 Poncho Arvayo Zatarain
[gmx-users] Morse potential Ting Zheng
[gmx-users] Cloud computing and Gromacs Jernej Zidar
[gmx-users] ATB Vasiliy Znamenskiy
[gmx-users] Temperature in Non-equilibrium MD simulation. Vasiliy Znamenskiy
[gmx-users] Automated Topology Builder Vasiliy Znamenskiy
[gmx-users] help on Graphene Nano Sheets marcello cammarata
[gmx-users] Regarding groups making by make_ndx neha chaudhary
[gmx-users] NMA with gromacs trajectory rajan kumar choudhary
[gmx-users] there wasn't md_0_1.xtc file marzieh dehghan
[gmx-users] there wasn't md_0_1.xtc file marzieh dehghan
[gmx-users] install xmgrace on centos 6.5 marzieh dehghan
[gmx-users] Gas phase simulation gozde ergin
[gmx-users] Fwd: Gas phase simulation gozde ergin
[gmx-users] Post-Processing on the REMD trj 14110220035 at fudan.edu.cn
[gmx-users] Post-Processing on the REMD trj 14110220035 at fudan.edu.cn
[gmx-users] pi-stacking energy between carbon nanotube and nucleic acids soumadwip ghosh
[gmx-users] entropy calculation soumadwip ghosh
[gmx-users] Pi stacking soumadwip ghosh
[gmx-users] there wasn't md_0_1.xtc file soumadwip ghosh
[gmx-users] Pi stacking soumadwip ghosh
[gmx-users] pi stacking soumadwip ghosh
[gmx-users] hydration dynamics soumadwip ghosh
[gmx-users] Fwd: hydration dynamics soumadwip ghosh
[gmx-users] DNA hydration water dynamics soumadwip ghosh
[gmx-users] hydrocarbons simulation saly jackson
[gmx-users] hydrocarbons simulation saly jackson
[gmx-users] calculating free energy nazli kashani javid
[gmx-users] calculating free energy nazli kashani javid
[gmx-users] how to fit parameters for terminal residues in amber99sb-ildn? sang eun jee
[gmx-users] how to fit parameters for terminal residues in amber99sb-ildn? sang eun jee
[gmx-users] how to fit parameters for terminal residues in amber99sb-ildn? sang eun jee
[gmx-users] Generating topology file containing HYP sang eun jee
[gmx-users] minimum image convention pratibha kapoor
[gmx-users] clustering pratibha kapoor
[gmx-users] end to end normalized vector pratibha kapoor
[gmx-users] entropy calculation tarak karmakar
[gmx-users] how to make average hbond plot in gromacs using xmgrace rajan kumar
[gmx-users] .xtc to DCD conversion rajan kumar
[gmx-users] Gromcas nlmanso at laposte.net
[gmx-users] help: Gromacs nlmanso at laposte.net
[gmx-users] forcefield error for atoms mah maz
[gmx-users] simultaneous runs mah maz
[gmx-users] simultaneous runs mah maz
[gmx-users] POPE lipid from Tieleman's web site, the box of xy dimension will shrink during the simulation niexuechuan
[gmx-users] POPE lipid from Tieleman's web site, the box of xy dimension will shrink during the simulation niexuechuan
[gmx-users] POPE lipid from Tieleman's web site, the box of xy dimension will shrink during the simulation niexuechuan
[gmx-users] Order Parameters for alkyl chain niexuechuan
[gmx-users] A simple question saeed poorasad
[gmx-users] A simple question saeed poorasad
[gmx-users] A simple question saeed poorasad
[gmx-users] Topology file for Fullerene with OPLS_AA force field saeed poorasad
[gmx-users] no error on missing cpt file gromacs query
[gmx-users] no error on missing cpt file gromacs query
[gmx-users] free energy fatemeh ramezani
[gmx-users] trjconv_d errors lloyd riggs
[gmx-users] trjconv_d errors lloyd riggs
[gmx-users] calculating free energy lloyd riggs
[gmx-users] Steered MD simulation of drug molecules across the plasma membrane in gromacs 5.0.4 lloyd riggs
[gmx-users] error while executing do_dssp program sam
[gmx-users] mail About LJ obtained by g_energy vidhya sankar
[gmx-users] mail About LJ obtained by g_energy vidhya sankar
[gmx-users] About Analsysi tool vidhya sankar
[gmx-users] mail about g_energy parameter vidhya sankar
[gmx-users] Mail regarding g_enemat tool vidhya sankar
[gmx-users] Steered MD simulation of drug molecules across the plasma membrane in gromacs 5.0.4 mahender singh
[gmx-users] Steered MD simulation of drug molecules across the plasma membrane in gromacs 5.0.4 mahender singh
[gmx-users] Steered MD simulation of drug molecules across the plasma membrane in gromacs 5.0.4 mahender singh
[gmx-users] Steered MD simulation of drug molecules across the plasma membrane in gromacs 5.0.4 mahender singh
[gmx-users] Pull-code implementation Gromacs_v5.0.2 raghav singh
[gmx-users] MD simulation of metalloprotein andrea spitaleri
[gmx-users] Installation Error su
[gmx-users] Bootstrap error su
[gmx-users] Bootstrap error su
[gmx-users] Can NAMD simulation solve the problem of coordinate clash in a structural model? sunyeping
[gmx-users] How to add a repulsive harmonic potential atsutoshi.okabe at takeda.com
[gmx-users] How to add a repulsive harmonic potential atsutoshi.okabe at takeda.com
[gmx-users] How to add a repulsive harmonic potential atsutoshi.okabe at takeda.com
[gmx-users] How to add a repulsive harmonic potential atsutoshi.okabe at takeda.com
[gmx-users] How to add a repulsive harmonic potential atsutoshi.okabe at takeda.com
[gmx-users] difference of calculation time between the numbers of fep-lambdas values nao.morishita at takeda.com
[gmx-users] difference of calculation time between the numbers of fep-lambdas values nao.morishita at takeda.com
[gmx-users] the study of concentration effect in gromacs elham tazikeh
[gmx-users] the study of concentration effect in gromacs elham tazikeh
[gmx-users] increase the concentration of protein or drug elham tazikeh
[gmx-users] How to call an external LAPACK function in gromacs qian wang
[gmx-users] How to call an external LAPACK function in gromacs qian wang
[gmx-users] How to call an external LAPACK function in gromacs qian wang
[gmx-users] How to call an external LAPACK function in gromacs qian wang
[gmx-users] How to call an external LAPACK function in gromacs qian wang
[gmx-users] Convert-tpr pbc problem for membrane protein wh
[gmx-users] Convert-tpr pbc problem for membrane protein wh
[gmx-users] Partial Energy from Traj xy21hb
[gmx-users] g_anaeig Error! xy21hb
[gmx-users] g_anaeig Error! xy21hb
[gmx-users] g_anaeig Error! xy21hb
[gmx-users] g_anaeig Error! xy21hb
[gmx-users] g_anaeig Error! xy21hb
[gmx-users] Constraints applied for keeping rigid in ND hang yin
[gmx-users] Constraints applied for keeping rigid in ND hang yin
[gmx-users] Constraints applied for keeping rigid in ND hang yin
[gmx-users] Environmental variable setting for gmx 5.0.4 yoochan
[gmx-users] how to fit parameters for terminal residues in amber99sb-ildn? yoochan
[gmx-users] how to fit parameters for terminal residues in amber99sb-ildn? yoochan
[gmx-users] g_wham error in umbrella simulation yoochan
[gmx-users] How to get the .gro file for MgO surface zhp1006
[gmx-users] Gromacs on Nvidia 830M Александр Селютин
[gmx-users] Virtual sites and diffusion coefficients for CO2 贺仲金
[gmx-users] Running Multiple simulation in single PC. 라지브간디

Last message date: Thu Apr 30 23:38:46 CEST 2015
Archived on: Thu Apr 30 23:38:47 CEST 2015

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