[gmx-users] there wasn't md_0_1.xtc file

[marzieh dehghan]

Hi every body

after creating a covalent bond, I ran output file based on GROMACS tutorial
(Lysozyme in water) and applied the following command " mdrun -deffnm
md_0_1". at the end of 1ns, I achieved the following output files:
md_0_1.cpt
md_0_1.edr
md_0_1.gro
md_0_1.log
md_0_1.tpr
md_0_1.trr
md_0_1_prev.cpt

but unfortunatelly there wasn't md_0_1.xtc file.

please let me know how can I calculate distance, RMSD or RMSF because they
need to have md_0_1.xtc ?

I am looking forward to getting your nice answer

best wishes

marzieh
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*Marzieh DehghanPhD Candidate of BiochemistryInstitute of biochemistry and
Biophysics (IBB)University of Tehran, Tehran- Iran.*