[gmx-users] Is it possible to generate lipid.itp with Charmm36 ff?

Justin Lemkul jalemkul at vt.edu
Tue Apr 7 23:45:01 CEST 2015



On 4/7/15 4:29 PM, Yunlong Liu wrote:
> Hi Micholas,
>
> I will try it but last time when I tried, the charm-Gui was not working.
>

If you have some specific problem, you should report it to the CHARMM-GUI team. 
  Unfortunately "not working" is not a helpful diagnosis.  Things should be 
fully operational and have been for a long time.

-Justin

> Yunlong
>
> Sent from my iPhone
>
>> On Apr 7, 2015, at 4:21 PM, Smith, Micholas D. <smithmd at ornl.gov> wrote:
>>
>> If you mean you want to set up the system for using Charmm36's parameters, you might be able to use the Charmm-GUI (Wonpil Im's group)
>>
>> -Micholas
>>
>> ===================
>> Micholas Dean Smith, PhD.
>> Post-doctoral Research Associate
>> University of Tennessee/Oak Ridge National Laboratory
>> Center for Molecular Biophysics
>>
>> ________________________________________
>> From: gromacs.org_gmx-users-bounces at maillist.sys.kth.se <gromacs.org_gmx-users-bounces at maillist.sys.kth.se> on behalf of Yunlong Liu <yliu120 at jh.edu>
>> Sent: Tuesday, April 07, 2015 4:18 PM
>> To: gromacs.org_gmx-users at maillist.sys.kth.se
>> Subject: [gmx-users] Is it possible to generate lipid.itp with Charmm36 ff?
>>
>> Hi,
>>
>> I am doing membrane-protein simulation with Charmm36 forcefield. I would
>> like to know whether I can generate the lipid force field with Charmm36
>> by some available tools?
>>
>> Yunlong
>> --
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-- 
==================================================

Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

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