[gmx-users] genbox command in gromacs-5.0.1

Justin Lemkul jalemkul at vt.edu
Wed Apr 8 14:42:02 CEST 2015

On 4/8/15 8:38 AM, Kalyanashis Jana wrote:
> Dear all,
> I have installed gromacs-5.0.1 version successfully but when I have run the
> genbox command, it has shown that "This tool has been removed from Gromacs
> 5.0. Please see
>    http://www.gromacs.org/Documentation/How-tos/Tool_Changes_for_5.0
> for ideas how to perform the same tasks with the new tools."
> In gromacs site, it is written that
> genbox
> This tool has been split to gmx solvate and gmx insert-molecules.
> Can anyone please help me?

With what task?  genbox has been split based on two core functions: solvation 
and insertion of molecules.  Start with "gmx help solvate" and "gmx help 
insert-molecules" to see how to use each.



Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441


More information about the gromacs.org_gmx-users mailing list