[gmx-users] Can NAMD simulation solve the problem of coordinate clash in a structural model?

[sunyeping]

Dear all,

I modelled a structural model of a complex containing two large proteins. There are serious coordinate clashes between these two proteins in the model. Can I expect to do Gromacs simulation to solve the problem of cooridnate clash and obtain a more rational model?
Best regards,
Yeping Sun
Institute of Microbiology, Chinese Academy of Sciences