[gmx-users] Can NAMD simulation solve the problem of coordinate clash in a structural model?

sunyeping sunyeping at aliyun.com
Mon Apr 13 06:05:23 CEST 2015

Dear all,

I modelled a structural model of a complex containing two large proteins. There are serious coordinate clashes between these two proteins in the model. Can I expect to do Gromacs simulation to solve the problem of cooridnate clash and obtain a more rational model?
Best regards,
Yeping Sun
Institute of Microbiology, Chinese Academy of Sciences

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