[gmx-users] trjconv for cutting the trajectory in small subtrajectories

[Justin Lemkul]

On 4/25/15 9:24 AM, Mahboobeh Eslami wrote:
> Thanks my friends
> I checked new trajectory by gmxcheck and get following text:
>
> Reading frame       0 time 7000.000
> # Atoms  8383
> Precision 0.001 (nm)
> Reading frame    5000 time 17000.000
>
> Item        #frames Timestep (ps)
> Step          5501    2
> Time          5501    2
> Lambda           0
> Coords        5501    2
> Velocities       0
> Forces           0
> Box           5501    2
>
> Reading frame is 5000 but desired frames are 5500 frame. I'm confused.
> best
>


Again, this is irrelevant; it's a buffered progress indicator that has a fixed 
interval for printing (1000 past a certain point).  You have 5501 frames (5500 + 
the first, inclusive, so 5501).

-Justin

-- 
==================================================

Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

==================================================