[gmx-users] High speed performance

Asmaa El khodary asma.moh_990 at aucegypt.edu
Mon Aug 3 15:03:35 CEST 2015


Hi,
I'm currently simulating a protein consists of 2776 atoms with 173 residues
using CPU with 5 nodes, 40 core processors. The performance of the
simulation is 70 ns per day (50 ns simulation takes almost 18 hours). Is
this realistic or not?
Thanks in Advance
Asma


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