[gmx-users] PBC in a closed box.
Rodney Versace Babilonia
rversace at ccny.cuny.edu
Tue Aug 4 19:24:08 CEST 2015
I am trying to simulate the effusion process of water through hole in a very thin film. The film is partitioning the water box, I wish to count the numbers of waters before and after the simulation in each compartment, but I am afraid that the use of periodic boundary conditions will make waters from one side going to the other side through the boundaries and that affect my counting, in case I turn off the PBC, what kind of electrostatic treatment should I use?
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