[gmx-users] genbox, solvate, insert-molecules

Justin Lemkul jalemkul at vt.edu
Wed Aug 5 19:37:32 CEST 2015

On 8/5/15 1:05 PM, Joseph Dufresne wrote:
> I have recently installed versions 5.0.5 and 5.0.6. Documentation states
> that *genbox *has been removed and replaced with *solvate *and
> *insert-molecules*. However these modules are not present or available for
> use in the installation. I have searched the directory that contains all of
> the modules and *genbox* *is* there, but when I try to run the command a
> message is returned stating that *genbox* has been removed. What gives?
> Genbox *is *in the directory, but *does not* work. Insert-molecules and
> Solvate are *supposed* to be there, but are *not* present. Am I missing
> something? Any help would be greatly appreciated. I am a new Gromacs user
> and I might be missing something obvious.

Because everything is a module of the "gmx" binary.

gmx solvate ...
gmx insert-molecules ...



Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441


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