[gmx-users] Problem compiling Gromacs 5.1

[atsutoshi0708 at gmail.com]

Line 52 of cmake/FindSphinx.cmake file is written below.
string(REGEX REPLACE "Sphinx \\([^)]*\\) ([^ ]+)" "\\1" SPHINX_EXECUTABLE_VERSION "${SPHINX_VERSION_OUTPUT_VARIABLE}")

Can you tell me how I can change the line?

Bests,
Leucer


2015/08/19 23:11、Mark Abraham <mark.j.abraham at gmail.com> のメッセージ:

> Hi,
>> On Wed, Aug 19, 2015 at 3:49 PM 岡部篤俊 <atsutoshi0708 at gmail.com> wrote:
>> 
>> Hi,
>> 
>> I am unable to  compile Gromamcs 5.1 using the following cmake command.
>> cmake .. -DGMX_FFT_LIBRARY=fftpack
>> -DCMAKE_INSTALL_PREFIX=gromacs/gromacs-5.1 -DGMX_DOUBLE=off
>> -DGMX_THREAD_MPI=off -DGMX_MPI=on -DGMX_CPU_ACCELERATION=SSE4.1
> 
> 
> Unrelated, but you now need to use -DGMX_SIMD=SSE4.1 to have the same
> effect.
> 
> 
>> -DGMX_USE_RDTSCP=off
>> 
>> Then I got the error message.
>> Boost >= 1.44 not found. Using minimal internal version. This may cause
>> trouble if you plan on compiling/linking other software that uses Boost
>> against GROMACS.
>> CMake Error at cmake/FindSphinx.cmake:52 (string):
>>  string sub-command REGEX, mode REPLACE needs at least 6 arguments total
>> to
>>  command.
>> Call Stack (most recent call first):
>>  docs/CMakeLists.txt:62 (find_package)
>> 
>> Could you advice what could be causing this error?
> 
> We try to find Sphinx in case people want to build the new documentation,
> but it looks like some part of the detection isn't reliable enough. Can you
> please try changing line 52 of cmake/FindSphinx.cmake to read
> 
>    string(REGEX REPLACE "Sphinx \\([^)]*\\) ([^ ]+)" "\\1"
> SPHINX_EXECUTABLE_VERSION "${SPHINX_VERSION_OUTPUT_VARIABLE}")
> 
> and let us know how you go?
> 
> Mark
> 
> I was able to compile Gromacs 5.0 using same cmake command….
>> 
>> Bests,
>> Leucer
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