[gmx-users] Problem compiling Gromacs 5.1

[Kroon, P.C.]

Just use your favourite text editor.

Peter

On Thu, Aug 20, 2015 at 3:10 AM, <atsutoshi0708 at gmail.com> wrote:

> Line 52 of cmake/FindSphinx.cmake file is written below.
> string(REGEX REPLACE "Sphinx \\([^)]*\\) ([^ ]+)" "\\1"
> SPHINX_EXECUTABLE_VERSION "${SPHINX_VERSION_OUTPUT_VARIABLE}")
>
> Can you tell me how I can change the line?
>
> Bests,
> Leucer
>
>
> 2015/08/19 23:11、Mark Abraham <mark.j.abraham at gmail.com> のメッセージ:
>
> > Hi,
> >> On Wed, Aug 19, 2015 at 3:49 PM 岡部篤俊 <atsutoshi0708 at gmail.com> wrote:
> >>
> >> Hi,
> >>
> >> I am unable to  compile Gromamcs 5.1 using the following cmake command.
> >> cmake .. -DGMX_FFT_LIBRARY=fftpack
> >> -DCMAKE_INSTALL_PREFIX=gromacs/gromacs-5.1 -DGMX_DOUBLE=off
> >> -DGMX_THREAD_MPI=off -DGMX_MPI=on -DGMX_CPU_ACCELERATION=SSE4.1
> >
> >
> > Unrelated, but you now need to use -DGMX_SIMD=SSE4.1 to have the same
> > effect.
> >
> >
> >> -DGMX_USE_RDTSCP=off
> >>
> >> Then I got the error message.
> >> Boost >= 1.44 not found. Using minimal internal version. This may cause
> >> trouble if you plan on compiling/linking other software that uses Boost
> >> against GROMACS.
> >> CMake Error at cmake/FindSphinx.cmake:52 (string):
> >>  string sub-command REGEX, mode REPLACE needs at least 6 arguments total
> >> to
> >>  command.
> >> Call Stack (most recent call first):
> >>  docs/CMakeLists.txt:62 (find_package)
> >>
> >> Could you advice what could be causing this error?
> >
> > We try to find Sphinx in case people want to build the new documentation,
> > but it looks like some part of the detection isn't reliable enough. Can
> you
> > please try changing line 52 of cmake/FindSphinx.cmake to read
> >
> >    string(REGEX REPLACE "Sphinx \\([^)]*\\) ([^ ]+)" "\\1"
> > SPHINX_EXECUTABLE_VERSION "${SPHINX_VERSION_OUTPUT_VARIABLE}")
> >
> > and let us know how you go?
> >
> > Mark
> >
> > I was able to compile Gromacs 5.0 using same cmake command….
> >>
> >> Bests,
> >> Leucer
> >> --
> >> Gromacs Users mailing list
> >>
> >> * Please search the archive at
> >> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> >> posting!
> >>
> >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
> >>
> >> * For (un)subscribe requests visit
> >> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> >> send a mail to gmx-users-request at gromacs.org.
> > --
> > Gromacs Users mailing list
> >
> > * Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> posting!
> >
> > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
> >
> > * For (un)subscribe requests visit
> > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> send a mail to gmx-users-request at gromacs.org.
> --
> Gromacs Users mailing list
>
> * Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> posting!
>
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
> * For (un)subscribe requests visit
> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> send a mail to gmx-users-request at gromacs.org.
>