[gmx-users] trajectory file

[Justin Lemkul]

On 12/3/15 4:39 PM, mihammad roos wrote:
> Hi everybody,
>
>
>
> I ran the production MD and got the trajectory file (xtcformat) but as I’m new to MD I don’t know how to visualize it. I opened it withvmd and it could read the atoms and frames but didn’t show anything when playingthe frames. I don’t know whether another program can do it or my xtc is notcorrect.
>

Try some VMD tutorials. Loading coordinates and subsequently trajectories (as 
data for those initial coordinates) is covered in any basic tutorial. Ask VMD 
questions on the VMD mailing list.

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

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