December 2015 Archives by author

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Starting: Tue Dec 1 00:58:07 CET 2015
Ending: Thu Dec 31 20:56:10 CET 2015
Messages: 441

[gmx-users] System blowing up at restart Mark Abraham
[gmx-users] System blowing up at restart Mark Abraham
[gmx-users] System blowing up at restart Mark Abraham
[gmx-users] GROMACS infrastructure offline briefly Mark Abraham
[gmx-users] regarding the size of xtc file Mark Abraham
[gmx-users] tarce file loading error Mark Abraham
[gmx-users] Error with bonded interactions Mark Abraham
[gmx-users] Regarding .itp file to the system Mark Abraham
[gmx-users] CMake Error when installing Gromacs 5.0.7 Mark Abraham
[gmx-users] (no subject) Mark Abraham
[gmx-users] X11 forwarding! Mark Abraham
[gmx-users] X11 forwarding! Mark Abraham
[gmx-users] periodic improper dihedral Mark Abraham
[gmx-users] periodic improper dihedral Mark Abraham
[gmx-users] Problems with energy minimization Mark Abraham
[gmx-users] periodic improper dihedral Mark Abraham
[gmx-users] periodic improper dihedral Mark Abraham
[gmx-users] gromacs with v-rescale thermostat Mark Abraham
[gmx-users] Calculating shear viscosity of a liquid - different results from different verions of Gromacs Mark Abraham
[gmx-users] Extending simulations Mark Abraham
[gmx-users] mdrun error Mark Abraham
[gmx-users] Free Energy calculations with GROMACS 5.0.5 on cluster Mark Abraham
[gmx-users] installation of gromacs 5.1 Mark Abraham
[gmx-users] Extending simulations Mark Abraham
[gmx-users] Completed simulation in Gromacs 4.6.5. Can I extend it with Gromacs 5.1.1? Mark Abraham
[gmx-users] installation of gromacs 5.1 Mark Abraham
[gmx-users] Update Amber force fields, ff12SB abd ff14SB gromacs implementation testing Mark Abraham
[gmx-users] Can Gromacs 5.0~5.1.x perform Implicit solvent simulation Mark Abraham
[gmx-users] Umbrella Sampling and GPU Mark Abraham
[gmx-users] supervised MD in Gromacs? Albert
[gmx-users] supervised MD in Gromacs? Albert
[gmx-users] supervised MD in Gromacs? Albert
[gmx-users] supervised MD in Gromacs? Albert
[gmx-users] supervised MD in Gromacs? Albert
[gmx-users] supervised MD in Gromacs? Albert
[gmx-users] supervised MD in Gromacs? Albert
[gmx-users] PCA analysis results Nithyanan Annamalai
[gmx-users] PCA analysis results Nithyanan Annamalai
[gmx-users] PCA analysis results Nithyanan Annamalai
[gmx-users] pdb2gmx (ver 5.0.7) - choosing -ter "None" does not work Yoav Atsmon-Raz
[gmx-users] constraining secondary structure gmx 5 Yoav Atsmon-Raz
[gmx-users] constraining secondary structure gmx 5 Yoav Atsmon-Raz
[gmx-users] Error with bonded interactions Pallavi Banerjee
[gmx-users] Error with bonded interactions Pallavi Banerjee
[gmx-users] Error with bonded interactions Pallavi Banerjee
[gmx-users] Methanol geometry parameters Barnett, James W
[gmx-users] Help with Gromacs-5.1.1 installation in Cluster Barnett, James W
[gmx-users] Range of block lengths in gmx energy error estimate only gives one value Barnett, James W
[gmx-users] Regarding Gromacs compatibilty Subhomoi Borkotoky
[gmx-users] grid cell out of range Fabricio Cannini
[gmx-users] grid cell out of range Fabricio Cannini
[gmx-users] Distance between atom A and the nearest image of atom B Elton Carvalho
[gmx-users] Methanol geometry parameters Vitaly V. Chaban
[gmx-users] creating an "infinite" filament with editconf Vitaly V. Chaban
[gmx-users] xtc files Vitaly V. Chaban
[gmx-users] RDF convergence Vitaly V. Chaban
[gmx-users] RDF convergence Vitaly V. Chaban
[gmx-users] supervised MD in Gromacs? Vitaly V. Chaban
[gmx-users] bond constraints: which distance is constrained? Vitaly V. Chaban
[gmx-users] bond constraints: which distance is constrained? Vitaly V. Chaban
[gmx-users] Water droplet in vacuum Ray Chao
[gmx-users] Extending simulations Chandan Choudhury
[gmx-users] Distance between atom A and the nearest image of atom B Michael Cristòfol Clough
[gmx-users] Distance between atom A and the nearest image of atom B Michael Cristòfol Clough
[gmx-users] Equilibration fails only when run from script R Corey
[gmx-users] supervised MD in Gromacs? João M. Damas
[gmx-users] RDF convergence Sudip Das
[gmx-users] RDF convergence Sudip Das
[gmx-users] ligand.mol2 Nikhil M (via Google Drive)
[gmx-users] ligand.str Nikhil M (via Google Drive)
[gmx-users] Completed simulation in Gromacs 4.6.5. Can I extend it with Gromacs 5.1.1? Jorge Fernández de Cossío Díaz
[gmx-users] Help with editconf Rita Galvão
[gmx-users] Help with editconf Rita Galvão
[gmx-users] Help with editconf Rita Galvão
[gmx-users] Gromacs 5.0.5 Parallelization GPU Tesla S1070 Antoniel A. S. Gomes
[gmx-users] [gmx-developers] Gromacs 5.0.5 Parallelization GPU Tesla S1070 Antoniel A. S. Gomes
[gmx-users] SwissParam and Gromacs Amali Guruge
[gmx-users] center Malihe Hasanzadeh
[gmx-users] Warning in the em. João Henriques
[gmx-users] supervised MD in Gromacs? João Henriques
[gmx-users] supervised MD in Gromacs? João Henriques
[gmx-users] supervised MD in Gromacs? João Henriques
[gmx-users] supervised MD in Gromacs? João Henriques
[gmx-users] Free energy of ice crystals (Thermodynamic Integration) Nathan K Houtz
[gmx-users] Errors from alchemical_analysis.py from analyzing .xvg files Nathan K Houtz
[gmx-users] rm command. Igaev, Maxim
[gmx-users] creating an "infinite" filament with editconf Igaev, Maxim
[gmx-users] creating an "infinite" filament with editconf Igaev, Maxim
[gmx-users] creating an "infinite" filament with editconf Igaev, Maxim
[gmx-users] creating an "infinite" filament with editconf Igaev, Maxim
[gmx-users] Calculating shear viscosity of a liquid - different results from different verions of Gromacs Mateusz Jasik
[gmx-users] how to make .trr file readable Ayesha Kanwal
[gmx-users] how to make .trr file readable Ayesha Kanwal
[gmx-users] LINC warning after long time simulations Kavyani, S.
[gmx-users] Free Energy calculations with GROMACS 5.0.5 on cluster Live King
[gmx-users] Extending simulations Maryam Kowsar
[gmx-users] Performance on multiple GPUs per node Jens Krüger
[gmx-users] g_correlation Kutzner, Carsten
[gmx-users] g_correlation Kutzner, Carsten
[gmx-users] [MGMS-DS]: Molecular Modelling Workshop April 4-6, 2016 in Erlangen, Germany Harald Lanig
[gmx-users] Fwd: Help with Gromacs 5.1 mdp options for CHARMM27 force field Justin Lemkul
[gmx-users] LINC warning after long time simulations Justin Lemkul
[gmx-users] extracting coordinates from traj.xtc Justin Lemkul
[gmx-users] Equilibration fails only when run from script Justin Lemkul
[gmx-users] atom numbering Justin Lemkul
[gmx-users] how to make .trr file readable Justin Lemkul
[gmx-users] extracting coordinates from traj.xtc Justin Lemkul
[gmx-users] SwissParam and Gromacs Justin Lemkul
[gmx-users] trajectory file Justin Lemkul
[gmx-users] extracting coordinates from traj.xtc Justin Lemkul
[gmx-users] Fwd: Help with Gromacs 5.1 mdp options for CHARMM27 force field Justin Lemkul
[gmx-users] Regarding Gromacs compatibilty Justin Lemkul
[gmx-users] simulation stopped , restart from end point but missing remaining time datas Justin Lemkul
[gmx-users] Methanol geometry parameters Justin Lemkul
[gmx-users] Methanol geometry parameters Justin Lemkul
[gmx-users] Fwd: Help with Gromacs 5.1 mdp options for CHARMM27 force field Justin Lemkul
[gmx-users] extracting coordinates from traj.xtc Justin Lemkul
[gmx-users] extracting coordinates from traj.xtc Justin Lemkul
[gmx-users] (no subject) Justin Lemkul
[gmx-users] using SPC water with Charmm FF Justin Lemkul
[gmx-users] using SPC water with Charmm FF Justin Lemkul
[gmx-users] supervised MD in Gromacs? Justin Lemkul
[gmx-users] Writing checkpoint Justin Lemkul
[gmx-users] Writing checkpoint Justin Lemkul
[gmx-users] Fwd: Help with Gromacs 5.1 mdp options for CHARMM27 force field Justin Lemkul
[gmx-users] after simulation coulombic and van der waals energies shows zero -protein-ligand simulation Justin Lemkul
[gmx-users] including .itp file to system Justin Lemkul
[gmx-users] unable to replay to mailing list Justin Lemkul
[gmx-users] xtc file size is in the order of MB's anything wrong?On GPU Justin Lemkul
[gmx-users] Reg size of the xtc file :https://www.mail-archive.com/gromacs.org_gmx-users at maillist.sys.kth.se/msg16285.html Justin Lemkul
[gmx-users] Fwd: Help with Gromacs 5.1 mdp options for CHARMM27 force field Justin Lemkul
[gmx-users] Regarding .itp file to the system Justin Lemkul
[gmx-users] regarding xtc file size Justin Lemkul
[gmx-users] using OH ions in combination with CHARMM27 force field Justin Lemkul
[gmx-users] Invalid order for directive defaults Justin Lemkul
[gmx-users] using OH ions in combination with CHARMM27 force field Justin Lemkul
[gmx-users] AMBER force fields, ff12SB and ff14SB for GROMACS Justin Lemkul
[gmx-users] Regarding generating itp file. Justin Lemkul
[gmx-users] Regarding generating itp file. Justin Lemkul
[gmx-users] Fwd: Help with Gromacs 5.1 mdp options for CHARMM27 force field Justin Lemkul
[gmx-users] parameter for repeating units with cgenff Justin Lemkul
[gmx-users] parameter for repeating units with cgenff Justin Lemkul
[gmx-users] parameter for repeating units with cgenff Justin Lemkul
[gmx-users] parameter for repeating units with cgenff Justin Lemkul
[gmx-users] parameter for repeating units with cgenff Justin Lemkul
[gmx-users] parameter for repeating units with cgenff Justin Lemkul
[gmx-users] Fwd: Help with Gromacs 5.1 mdp options for CHARMM27 force field Justin Lemkul
[gmx-users] Regarding too many LINCS warnings Justin Lemkul
[gmx-users] amber force field ff12SB and ff14SB for gromacs uploaded Justin Lemkul
[gmx-users] System blowing up in Gromacsv5.0.5 but not in v4.5.4 Justin Lemkul
[gmx-users] Calculation of polar energy question Justin Lemkul
[gmx-users] bond constraints: which distance is constrained? Justin Lemkul
[gmx-users] System blowing up in Gromacsv5.0.5 but not in v4.5.4 Justin Lemkul
[gmx-users] MD production Justin Lemkul
[gmx-users] PBSA calculations Justin Lemkul
[gmx-users] System blowing up in Gromacsv5.0.5 but not in v4.5.4 Justin Lemkul
[gmx-users] PBSA calculations Justin Lemkul
[gmx-users] box type Justin Lemkul
[gmx-users] regarding the use of g_hbond Justin Lemkul
[gmx-users] Simulations of inorganic polymers Justin Lemkul
[gmx-users] Help calculation on cluster Justin Lemkul
[gmx-users] identifying terminal residue error Justin Lemkul
[gmx-users] PH of system Justin Lemkul
[gmx-users] Extending simulations Justin Lemkul
[gmx-users] How to calculate which residues are within a certain distance from a carbon nanotube Justin Lemkul
[gmx-users] Non standard or modified amino acids Justin Lemkul
[gmx-users] meaning of -fr in trjconv Justin Lemkul
[gmx-users] Problem with editconf Justin Lemkul
[gmx-users] Update Amber force fields, ff12SB abd ff14SB gromacs implementation testing Justin Lemkul
[gmx-users] Problem with editconf Justin Lemkul
[gmx-users] Update Amber force fields, ff12SB abd ff14SB gromacs implementation testing Justin Lemkul
[gmx-users] anomalous eigenvector in PCA (Principal Component Analysis) Justin Lemkul
[gmx-users] anomalous eigenvector in PCA (Principal Component Analysis) Justin Lemkul
[gmx-users] PH of system Justin Lemkul
[gmx-users] Update Amber force fields, ff12SB abd ff14SB gromacs implementation testing Justin Lemkul
[gmx-users] Problem with editconf Justin Lemkul
[gmx-users] COM motion removal: diffusion analysis Justin Lemkul
[gmx-users] Problem with constant distance Justin Lemkul
[gmx-users] Charmm gui error when making topology Justin Lemkul
[gmx-users] cgenff_charmm2gmx conversion error Justin Lemkul
[gmx-users] Problem in Free Energy Calculations Justin Lemkul
[gmx-users] protonation_states Justin Lemkul
[gmx-users] Problem in Free Energy Calculations Justin Lemkul
[gmx-users] tutorial for "dual" alchemical transformation in gromacs? Hannes Loeffler
[gmx-users] tutorial for "dual" alchemical transformation in gromacs? Hannes Loeffler
[gmx-users] tutorial for "dual" alchemical transformation in gromacs? Hannes Loeffler
[gmx-users] g_sas - General Information Evan Wesley Lowry
[gmx-users] Regarding generating itp file. Raju Lunkad
[gmx-users] gromacs.org_gmx-users Digest, Vol 140, Issue 43 Raju Lunkad
[gmx-users] Regarding too many LINCS warnings Raju Lunkad
[gmx-users] LINC warning after long time simulations Miguel Machuqueiro
[gmx-users] LINC warning after long time simulations Miguel Machuqueiro
[gmx-users] System blowing up at restart Marlon
[gmx-users] simulation stopped , restart from end point but missing remaining time datas Nikhil Maroli
[gmx-users] Cant replay to previous post,saying "No such files" Nikhil Maroli
[gmx-users] after simulation coulombic and van der waals energies shows zero -protein-ligand simulation Nikhil Maroli
[gmx-users] unable to replay to mailing list Nikhil Maroli
[gmx-users] xtc file size is in the order of MB's anything wrong?On GPU Nikhil Maroli
[gmx-users] Reg size of the xtc file :https://www.mail-archive.com/gromacs.org_gmx-users at maillist.sys.kth.se/msg16285.html Nikhil Maroli
[gmx-users] regarding xtc file size Nikhil Maroli
[gmx-users] regarding the size of xtc file Nikhil Maroli
[gmx-users] Umbrella Sampling and GPU Nikhil Maroli
[gmx-users] Charmm gui error when making topology Nikhil Maroli
[gmx-users] cgenff_charmm2gmx conversion error Nikhil Maroli
[gmx-users] including .itp file to system Alex Mathew
[gmx-users] Regarding .itp file to the system Alex Mathew
[gmx-users] Regarding .itp file to the system Alex Mathew
[gmx-users] Forcefiled Alex Mathew
[gmx-users] g_membed: how to input position and orientation of a membrane protein into lipid bilayer? Rita Melo
[gmx-users] Help with editconf Rita Melo
[gmx-users] protonation_states Rita Melo
[gmx-users] meaning of -fr in trjconv Zhenyu Meng
[gmx-users] meaning of -fr in trjconv Zhenyu Meng
[gmx-users] Calculate NMR shift from simulation Tushar Ranjan Moharana
[gmx-users] Calculate NMR shift from simulation Tushar Ranjan Moharana
[gmx-users] (no subject) Sepideh Momeninezhad
[gmx-users] Fw: thermodynamic integration André Farias de Moura
[gmx-users] temperature along the length of a box Cuong Nguyen
[gmx-users] g_mmpbsa Mishelle Oña
[gmx-users] Problems with g_mmpbsa Mishelle Oña
[gmx-users] Problems with g_mmpbsa Mishelle Oña
[gmx-users] Calculation of polar energy question Mishelle Oña
[gmx-users] PBSA calculations Mishelle Oña
[gmx-users] PBSA calculations Mishelle Oña
[gmx-users] Help calculation on cluster Mishelle Oña
[gmx-users] Help calculation on cluster Mishelle Oña
[gmx-users] System blowing up in Gromacsv5.0.5 but not in v4.5.4 NISHA Prakash
[gmx-users] System blowing up in Gromacsv5.0.5 but not in v4.5.4 NISHA Prakash
[gmx-users] System blowing up in Gromacsv5.0.5 but not in v4.5.4 NISHA Prakash
[gmx-users] Gromacs Workshop 2016? Deva Priya
[gmx-users] gromacs error Puneet
[gmx-users] bash: genrestr: command not found Puneet
[gmx-users] gromacs.org_gmx-users Digest, Vol 140, Issue 38 Puneet
[gmx-users] grid cell out of range Szilárd Páll
[gmx-users] Performance on multiple GPUs per node Szilárd Páll
[gmx-users] [gmx-developers] Gromacs 5.0.5 Parallelization GPU Tesla S1070 Szilárd Páll
[gmx-users] [gmx-developers] Gromacs 5.0.5 Parallelization GPU Tesla S1070 Szilárd Páll
[gmx-users] Fwd: Help with Gromacs 5.1 mdp options for CHARMM27 force field Szilárd Páll
[gmx-users] amber force field ff12SB and ff14SB for gromacs uploaded Szilárd Páll
[gmx-users] Short how-to for installing GROMACS with CUDA ... Szilárd Páll
[gmx-users] Short how-to for installing GROMACS with CUDA ... Szilárd Páll
[gmx-users] Short how-to for installing GROMACS with CUDA ... Szilárd Páll
[gmx-users] Short how-to for installing GROMACS with CUDA ... Szilárd Páll
[gmx-users] ERROR: non-zero virtual-site masses of atomtype MW* in TRP and TYR Guillermo Pérez-Hernández
[gmx-users] Calculation of [constrainttypes] lengths Gmx QA
[gmx-users] Viscosity of water from gmx tcaf Gmx QA
[gmx-users] Viscosity of water from gmx tcaf Gmx QA
[gmx-users] viscosity using green-kubo Gmx QA
[gmx-users] Fwd: Help with Gromacs 5.1 mdp options for CHARMM27 force field Rakesh Ramachandran
[gmx-users] Fwd: Help with Gromacs 5.1 mdp options for CHARMM27 force field Rakesh Ramachandran
[gmx-users] Fwd: Help with Gromacs 5.1 mdp options for CHARMM27 force field Rakesh Ramachandran
[gmx-users] Fwd: Help with Gromacs 5.1 mdp options for CHARMM27 force field Rakesh Ramachandran
[gmx-users] Fwd: Help with Gromacs 5.1 mdp options for CHARMM27 force field Rakesh Ramachandran
[gmx-users] Fwd: Help with Gromacs 5.1 mdp options for CHARMM27 force field Rakesh Ramachandran
[gmx-users] G53A6, non-symmetric selection metrix Mohsen Ramezanpour
[gmx-users] G53A6, non-symmetric selection metrix Mohsen Ramezanpour
[gmx-users] Extending simulations Soumya Lipsa Rath
[gmx-users] Extending simulations Soumya Lipsa Rath
[gmx-users] Problem with constant distance Samith Rathnayake
[gmx-users] Problem with constant distance Samith Rathnayake
[gmx-users] Structure Changed Sana Saeed
[gmx-users] thermodynamic integration Sana Saeed
[gmx-users] Fw: thermodynamic integration Sana Saeed
[gmx-users] box type Sana Saeed
[gmx-users] PH of system Sana Saeed
[gmx-users] protonation_states Sana Saeed
[gmx-users] alchemical_analysis.py Sana Saeed
[gmx-users] POVPC MARTINI ff Catarina A. Carvalheda dos Santos
[gmx-users] Help with editconf Catarina A. Carvalheda dos Santos
[gmx-users] Help with editconf Catarina A. Carvalheda dos Santos
[gmx-users] Help with editconf Catarina A. Carvalheda dos Santos
[gmx-users] POVPC MARTINI ff Catarina A. Carvalheda dos Santos
[gmx-users] POVPC MARTINI ff Catarina A. Carvalheda dos Santos
[gmx-users] how to add user-specified non-bonded interactions? Idriz Seferi
[gmx-users] Simulations of inorganic polymers Ganesh Shahane
[gmx-users] AMBER force fields, ff12SB and ff14SB for GROMACS Michael Shirts
[gmx-users] AMBER force fields, ff12SB and ff14SB for GROMACS Michael Shirts
[gmx-users] Free energy of ice crystals (Thermodynamic Integration) Michael Shirts
[gmx-users] amber force field ff12SB and ff14SB for gromacs uploaded Michael Shirts
[gmx-users] Errors from alchemical_analysis.py from analyzing .xvg files Michael Shirts
[gmx-users] Interfacial protein lipid interaction in Gromacs Roshan Shrestha
[gmx-users] creating an "infinite" filament with editconf Alexey Shvetsov
[gmx-users] creating an "infinite" filament with editconf Alexey Shvetsov
[gmx-users] amber force field ff12SB and ff14SB for gromacs uploaded Alexey Shvetsov
[gmx-users] amber force field ff12SB and ff14SB for gromacs uploaded Alexey Shvetsov
[gmx-users] trajectory file Alexey Shvetsov
[gmx-users] trajectory file Alexey Shvetsov
[gmx-users] System blowing up at restart Marlon Sidore
[gmx-users] LINC warning after long time simulations Smith, Micholas D.
[gmx-users] trajectory file Smith, Micholas D.
[gmx-users] g_sas - General Information Smith, Micholas D.
[gmx-users] using SPC water with Charmm FF Smith, Micholas D.
[gmx-users] using SPC water with Charmm FF Smith, Micholas D.
[gmx-users] gromacs error Smith, Micholas D.
[gmx-users] Structure Changed Smith, Micholas D.
[gmx-users] bash: genrestr: command not found Smith, Micholas D.
[gmx-users] Invalid order for directive defaults Smith, Micholas D.
[gmx-users] constraining secondary structure gmx 5 Smith, Micholas D.
[gmx-users] constraining secondary structure gmx 5 Smith, Micholas D.
[gmx-users] Help calculation on cluster Smith, Micholas D.
[gmx-users] Help calculation on cluster Smith, Micholas D.
[gmx-users] periodic improper dihedral Eric Smoll
[gmx-users] periodic improper dihedral Eric Smoll
[gmx-users] periodic improper dihedral Eric Smoll
[gmx-users] anomalous eigenvector in PCA (Principal Component Analysis) Nima Soltani
[gmx-users] anomalous eigenvector in PCA (Principal Component Analysis) Nima Soltani
[gmx-users] anomalous eigenvector in PCA (Principal Component Analysis) Nima Soltani
[gmx-users] Calculate NMR shift from simulation Andrea Spitaleri
[gmx-users] gmx_hydorder for water David van der Spoel
[gmx-users] creating an "infinite" filament with editconf David van der Spoel
[gmx-users] creating an "infinite" filament with editconf David van der Spoel
[gmx-users] viscosity using green-kubo David van der Spoel
[gmx-users] Range of block lengths in gmx energy error estimate only gives one value David van der Spoel
[gmx-users] high temperature molecular dynamics David van der Spoel
[gmx-users] Water droplet in vacuum David van der Spoel
[gmx-users] Help with Gromacs-5.1.1 installation in Cluster Ashalatha Sreshty
[gmx-users] how to make .trr file readable Peter Stern
[gmx-users] pdb2gmx (ver 5.0.7) - choosing -ter "None" does not work Peter Stern
[gmx-users] Methanol geometry parameters Peter Stern
[gmx-users] Methanol geometry parameters Peter Stern
[gmx-users] atom numbering Peter Stern
[gmx-users] bash: genrestr: command not found Peter Stern
[gmx-users] tutorial for "dual" alchemical transformation in gromacs? Sebastian Stolzenberg
[gmx-users] tutorial for "dual" alchemical transformation in gromacs? Sebastian Stolzenberg
[gmx-users] Short how-to for installing GROMACS with CUDA ... Téletchéa Stéphane
[gmx-users] Short how-to for installing GROMACS with CUDA ... Téletchéa Stéphane
[gmx-users] Warning in the em. Seera Suryanarayana
[gmx-users] Getting too much time to finish nvt equilibrium, why? Seera Suryanarayana
[gmx-users] (no subject) Seera Suryanarayana
[gmx-users] supervised MD in Gromacs? Piggot T.
[gmx-users] G53A6, non-symmetric selection metrix Piggot T.
[gmx-users] Methanol geometry parameters Kalev Takkis
[gmx-users] The rmsf -res option Laura Tociu
[gmx-users] trajectory file Timofey Tyugashev
[gmx-users] trajectory file Timofey Tyugashev
[gmx-users] Short how-to for installing GROMACS with CUDA ... Stéphane Téletchéa
[gmx-users] Methanol geometry parameters Daniele Veclani
[gmx-users] Methanol geometry parameters Daniele Veclani
[gmx-users] Methanol geometry parameters Daniele Veclani
[gmx-users] Methanol geometry parameters Daniele Veclani
[gmx-users] Invalid order for directive defaults Daniele Veclani
[gmx-users] AMBER force fields, ff12SB and ff14SB for GROMACS Man Hoang Viet
[gmx-users] AMBER force fields, ff12SB and ff14SB for GROMACS Man Hoang Viet
[gmx-users] amber force field ff12SB and ff14SB for gromacs uploaded Man Hoang Viet
[gmx-users] amber force field ff12SB and ff14SB for gromacs uploaded Man Hoang Viet
[gmx-users] amber force field ff12SB and ff14SB for gromacs uploaded Man Hoang Viet
[gmx-users] amber force fields, ff12SB abd ff14SB gromacs implementation: amino testing Man Hoang Viet
[gmx-users] Update Amber force fields, ff12SB abd ff14SB gromacs implementation testing Man Hoang Viet
[gmx-users] Update Amber force fields, ff12SB abd ff14SB gromacs implementation testing Man Hoang Viet
[gmx-users] Update Amber force fields, ff12SB abd ff14SB gromacs implementation testing Man Hoang Viet
[gmx-users] Update Amber force fields, ff12SB abd ff14SB gromacs implementation testing Man Hoang Viet
[gmx-users] center Tsjerk Wassenaar
[gmx-users] Getting too much time to finish nvt equilibrium, why? Tsjerk Wassenaar
[gmx-users] Help with editconf Tsjerk Wassenaar
[gmx-users] box type Tsjerk Wassenaar
[gmx-users] PCA analysis results Tsjerk Wassenaar
[gmx-users] PCA analysis results Tsjerk Wassenaar
[gmx-users] PCA analysis results Tsjerk Wassenaar
[gmx-users] g_correlation Felix W.-H. Weng
[gmx-users] g_correlation Felix W.-H. Weng
[gmx-users] atom numbering Marta Wisniewska
[gmx-users] atom numbering Marta Wisniewska
[gmx-users] rm command. Elsaid Younes
[gmx-users] X11 forwarding! Elsaid Younes
[gmx-users] Can Gromacs 5.0~5.1.x perform Implicit solvent simulation Chunlei ZHANG
[gmx-users] using SPC water with Charmm FF jhon espinosa
[gmx-users] about Circular Dichroism jhon espinosa
[gmx-users] using OH ions in combination with CHARMM27 force field soumadwip ghosh
[gmx-users] using OH ions in combination with CHARMM27 force field soumadwip ghosh
[gmx-users] using OH ions in combination with CHARMM27 force field soumadwip ghosh
[gmx-users] regarding the use of g_hbond soumadwip ghosh
[gmx-users] radial density profile soumadwip ghosh
[gmx-users] How to calculate which residues are within a certain distance from a carbon nanotube soumadwip ghosh
[gmx-users] FE-porphyrins susanta haldar
[gmx-users] LINCS WARNING masoud keramati
[gmx-users] Writing checkpoint masoud keramati
[gmx-users] Writing checkpoint masoud keramati
[gmx-users] Writing checkpoint masoud keramati
[gmx-users] high temperature molecular dynamics masoud keramati
[gmx-users] Extending simulations masoud keramati
[gmx-users] high temperature molecular dynamics masoud keramati
[gmx-users] Problems with energy minimization ibrahim khalil
[gmx-users] Problem with editconf abhishek khetan
[gmx-users] Problem with editconf abhishek khetan
[gmx-users] Problem with editconf abhishek khetan
[gmx-users] Problem in Free Energy Calculations shagun krishna
[gmx-users] Problem in Free Energy Calculations shagun krishna
[gmx-users] gromacs with v-rescale thermostat michal.kolar at marge.uochb.cas.cz
[gmx-users] extracting coordinates from traj.xtc mah maz
[gmx-users] extracting coordinates from traj.xtc mah maz
[gmx-users] extracting coordinates from traj.xtc mah maz
[gmx-users] extracting coordinates from traj.xtc mah maz
[gmx-users] extracting coordinates from traj.xtc mah maz
[gmx-users] PH of system jkrieger at mrc-lmb.cam.ac.uk
[gmx-users] POVPC MARTINI ff shivangi nangia
[gmx-users] POVPC MARTINI ff shivangi nangia
[gmx-users] POVPC MARTINI ff shivangi nangia
[gmx-users] Methanol geometry parameters chandan patel
[gmx-users] parameter for repeating units with cgenff gromacs query
[gmx-users] parameter for repeating units with cgenff gromacs query
[gmx-users] parameter for repeating units with cgenff gromacs query
[gmx-users] parameter for repeating units with cgenff gromacs query
[gmx-users] parameter for repeating units with cgenff gromacs query
[gmx-users] parameter for repeating units with cgenff gromacs query
[gmx-users] radial density profile gromacs query
[gmx-users] identifying terminal residue error gromacs query
[gmx-users] identifying terminal residue error gromacs query
[gmx-users] COM motion removal: diffusion analysis gromacs query
[gmx-users] COM motion removal: diffusion analysis gromacs query
[gmx-users] trajectory file mihammad roos
[gmx-users] trajectory file mihammad roos
[gmx-users] xtc files mihammad roos
[gmx-users] xtc files mihammad roos
[gmx-users] MD production mihammad roos
[gmx-users] (no subject) saranya
[gmx-users] (no subject) saranya
[gmx-users] (no subject) saranya
[gmx-users] how to make .trr file readable bipin singh
[gmx-users] alchemical_analysis.py hannes.loeffler at stfc.ac.uk
[gmx-users] Non standard or modified amino acids sun
[gmx-users] freezegrps is not working trinidad.mendez at usc.es
[gmx-users] gmx_order for water xy21hb
[gmx-users] gmx_order for water xy21hb
[gmx-users] gmx_order for water xy21hb
[gmx-users] gmx_order for water xy21hb
[gmx-users] gmx_hydorder for water xy21hb
[gmx-users] water sorient xy21hb
[gmx-users] water sorient xy21hb
[gmx-users] water sorient xy21hb
[gmx-users] water sorient xy21hb
[gmx-users] water sorient xy21hb
[gmx-users] mdrun error محمد گره گشا
[gmx-users] mdrun error محمد گره گشا
[gmx-users] mdrun error محمد گره گشا
[gmx-users] installation of gromacs 5.1 孙庭广
[gmx-users] installation of gromacs 5.1 孙庭广
[gmx-users] CMake Error when installing Gromacs 5.0.7 朱文鹏
[gmx-users] gromacs openmpi error 王珍
[gmx-users] (no subject) 黯烨倾尘
[gmx-users] tarce file loading error 黯烨倾尘
[gmx-users] 回复： tarce file loading error 黯烨倾尘

Last message date: Thu Dec 31 20:56:10 CET 2015
Archived on: Thu Dec 31 20:56:11 CET 2015

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