[gmx-users] Error with bonded interactions

[Pallavi Banerjee]

Hi Mark,

Thanks for your reply. The system is a single chain of coarse-grained
polymer in vacuum. And the error shows up when taking a bigger box (edge 10
nm). I simulated the same system with a smaller box (edge 6 nm), and it's
been running fine so far. Is this a domain decomposition issue?

Thanks!

-Pallavi Banerjee