[gmx-users] analysis of the secondary structure diagram

nazli kashani javid nazlikjavid at gmail.com
Sun Feb 22 12:18:39 CET 2015

Hi all

I used do_dssp command to analyze structural changes of my protein.
after converting to pdf format
I realized that the Y axis of my diagram is very compress and it is not
recognizable  ( residue axis) . I also change my ps.m2p file part y-major
y-major = 5.0
y-minor = 1.0

but it didn't work.how could I stretch my Y axis???????

my protein includes 4 alpha helix (bundle) and I use do-dssp for each
chain( 25 residue) individually.

I attach my pdf file :

any help is appreciated.

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