[gmx-users] analysis of the secondary structure diagram
jalemkul at vt.edu
Sun Feb 22 14:30:56 CET 2015
On 2/22/15 6:18 AM, nazli kashani javid wrote:
> Hi all
> I used do_dssp command to analyze structural changes of my protein.
> after converting to pdf format
> I realized that the Y axis of my diagram is very compress and it is not
> recognizable ( residue axis) . I also change my ps.m2p file part y-major
> y-major = 5.0
> y-minor = 1.0
> but it didn't work.how could I stretch my Y axis???????
Those keywords dealing with the frequency of tick marks, not the size of the
axes. What you want to adjust is the ybox/xbox ratio.
> my protein includes 4 alpha helix (bundle) and I use do-dssp for each
> chain( 25 residue) individually.
> I attach my pdf file :
> any help is appreciated.
Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow
Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201
jalemkul at outerbanks.umaryland.edu | (410) 706-7441
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