[gmx-users] analysis of the secondary structure diagram
nazlikjavid at gmail.com
Sun Feb 22 17:59:22 CET 2015
Sent from my iPhone
> On Feb 22, 2015, at 5:00 PM, Justin Lemkul <jalemkul at vt.edu> wrote:
>> On 2/22/15 6:18 AM, nazli kashani javid wrote:
>> Hi all
>> I used do_dssp command to analyze structural changes of my protein.
>> after converting to pdf format
>> I realized that the Y axis of my diagram is very compress and it is not
>> recognizable ( residue axis) . I also change my ps.m2p file part y-major
>> y-major = 5.0
>> y-minor = 1.0
>> but it didn't work.how could I stretch my Y axis???????
> Those keywords dealing with the frequency of tick marks, not the size of the axes. What you want to adjust is the ybox/xbox ratio.
>> my protein includes 4 alpha helix (bundle) and I use do-dssp for each
>> chain( 25 residue) individually.
>> I attach my pdf file :
>> any help is appreciated.
> Justin A. Lemkul, Ph.D.
> Ruth L. Kirschstein NRSA Postdoctoral Fellow
> Department of Pharmaceutical Sciences
> School of Pharmacy
> Health Sciences Facility II, Room 629
> University of Maryland, Baltimore
> 20 Penn St.
> Baltimore, MD 21201
> jalemkul at outerbanks.umaryland.edu | (410) 706-7441
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