[gmx-users] Adding missing heavy atoms

tarak karmakar tarak20489 at gmail.com
Sat Jul 11 07:07:21 CEST 2015

Hi Prasun,
If you really want to prepare the structure of a molecule, better try any
modelling software.
GaussView could be a handy option. Export your molecule in .pdb format and
a little bit of modification will make your nucleotide ready to use.

Best wishes,

On Sat, Jul 11, 2015 at 10:33 AM, prasun kumar <prasun30 at gmail.com> wrote:

> Dear All
> I have generated the base atoms of nucleotides in a structure, but it does
> not have sugar and phosphate atoms. Is there any method by which I can add
> them appropriately (either in A or B form)
> Thanx in advance
> Desire + stability = Resolution
> Resolution + Hard work = Success
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