July 2015 Archives by date

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Starting: Wed Jul 1 00:01:45 CEST 2015
Ending: Fri Jul 31 18:27:31 CEST 2015
Messages: 742

[gmx-users] Creating custom position restraints for a multi-chain protein Justin Lemkul
[gmx-users] Compiling GMX for GPU Fabricio Cannini
[gmx-users] Problem in .gro file faride badalkhani
[gmx-users] Compiling GMX for GPU Alex
[gmx-users] Problem in .gro file Justin Lemkul
[gmx-users] GPU and aux power supply Alex
[gmx-users] GPU and aux power supply Alex
[gmx-users] Error in volume coupling, no domain decomposition shabana yasmeen
[gmx-users] Error in volume coupling, no domain decomposition shabana yasmeen
[gmx-users] (no subject) RINU KHATTRI
[gmx-users] Gromacs MD application expert position in Stockholm Erik Lindahl
[gmx-users] calculation radial concentration plots soumadwip ghosh
[gmx-users] g_rdf Yulian Gavrilov
[gmx-users] calculation radial concentration plots Felipe Merino
[gmx-users] DNA virtual site with Charmm force field Terry
[gmx-users] calculation radial concentration plots soumadwip ghosh
[gmx-users] DNA virtual site with Charmm force field Erik Marklund
[gmx-users] Protein-DNA simulation LINKS error Timofey Tyugashev
[gmx-users] Error in volume coupling, no domain decomposition Justin Lemkul
[gmx-users] (no subject) Justin Lemkul
[gmx-users] Protein-DNA simulation LINKS error Justin Lemkul
[gmx-users] DNA virtual site with Charmm force field Terry
[gmx-users] Creating custom position restraints for a multi-chain protein Kolmus, Elizabeth K.
[gmx-users] patched version installation for free energy Ahmet Yıldırım
[gmx-users] patched version installation for free energy Justin Lemkul
[gmx-users] patched version installation for free energy Ahmet Yıldırım
[gmx-users] patched version installation for free energy Justin Lemkul
[gmx-users] patched version installation for free energy Ahmet Yıldırım
[gmx-users] pdb2gmx warning residue mapping Nikhil
[gmx-users] pdb2gmx warning residue mapping Justin Lemkul
[gmx-users] patched version installation for free energy Ahmet Yıldırım
[gmx-users] patched version installation for free energy Justin Lemkul
[gmx-users] patched version installation for free energy Ahmet Yıldırım
[gmx-users] patched version installation for free energy Justin Lemkul
[gmx-users] GPU and aux power supply Szilárd Páll
[gmx-users] GPU and aux power supply Alex
[gmx-users] gromacs.org_gmx-users Digest, Vol 135, Issue 5 Timofey Tyugashev
[gmx-users] To post Dr. Seema Mishra
[gmx-users] metal nanoparticles Nima Sa
[gmx-users] LINCS warnings for a single molecule in otherwise stable system Cara Kreck
[gmx-users] LINCS warnings for a single molecule in otherwise stable system Mark Abraham
[gmx-users] LINCS warnings for a single molecule in otherwise stable system Cara Kreck
[gmx-users] Translating .frcmod and .prep to .itp Timofey Tyugashev
[gmx-users] Translating .frcmod and .prep to .itp 范聪
[gmx-users] GPU and aux power supply Szilárd Páll
[gmx-users] temperature variation of all-atom CHARMM force fields soumadwip ghosh
[gmx-users] GPU and aux power supply Alex
[gmx-users] Verlet cutoff scheme and implicit solvent with PBC=no Andras Szilagyi
[gmx-users] Translating .frcmod and .prep to .itp Justin Lemkul
[gmx-users] temperature variation of all-atom CHARMM force fields Justin Lemkul
[gmx-users] Verlet cutoff scheme and implicit solvent with PBC=no Mark Abraham
[gmx-users] temperature variation of all-atom CHARMM force fields Mark Abraham
[gmx-users] uninstallation- removing unknown files from bin Maryam Kowsar
[gmx-users] temperature variation of all-atom CHARMM force field soumadwip ghosh
[gmx-users] Adding ions to membrane protein system anu chandra
[gmx-users] GPU and aux power supply Alex
[gmx-users] Adding ions to membrane protein system Mark Abraham
[gmx-users] Adding ions to membrane protein system João Martins
[gmx-users] How to mention torsional parameter in toplogy Tushar Ranjan Moharana
[gmx-users] Adding ions to membrane protein system Mark Abraham
[gmx-users] GPU and aux power supply Alex
[gmx-users] GPU and aux power supply Mark Abraham
[gmx-users] How to mention torsional parameter in toplogy Mark Abraham
[gmx-users] Regarding GROMACS Sivanandam M
[gmx-users] Regarding GROMACS Terry
[gmx-users] Energy contribution of individual residues Dr. Seema Mishra
[gmx-users] Temperature variation of CHARMM force field soumadwip ghosh
[gmx-users] RDF for molecules above a surface Jingjie Yeo (IHPC)
[gmx-users] Regarding PMF profile in umbrella samplling Sathish Kumar
[gmx-users] Regarding PMF profile in umbrella samplling Erik Marklund
[gmx-users] Fwd: Regarding PMF profile in umbrella samplling Sathish Kumar
[gmx-users] Energy contribution of individual residues Erik Marklund
[gmx-users] Regarding PMF profile in umbrella samplling Sathish Kumar
[gmx-users] Regarding PMF profile in umbrella samplling Sathish Kumar
[gmx-users] Regarding PMF profile in umbrella samplling Erik Marklund
[gmx-users] Regarding PMF profile in umbrella samplling Sathish Kumar
[gmx-users] Regarding PMF profile in umbrella samplling Erik Marklund
[gmx-users] PBC issue tm651209
[gmx-users] Install gromacs with intermolecular bonded interaction support Hassan Aaryapour
[gmx-users] Regarding PMF profile in umbrella samplling Sathish Kumar
[gmx-users] Install gromacs with intermolecular bonded interaction support Mark Abraham
[gmx-users] Topology for ready-made membrane protein system anu chandra
[gmx-users] HBlife time Nilesh Dhumal
[gmx-users] HBlife time Erik Marklund
[gmx-users] Vector calculation of COM of a molecule Him Shweta
[gmx-users] Topology for ready-made membrane protein system anu chandra
[gmx-users] Vector calculation of COM of a molecule Erik Marklund
[gmx-users] Missing terminal cap group anu chandra
[gmx-users] Missing terminal cap group Justin Lemkul
[gmx-users] Topology for ready-made membrane protein system Justin Lemkul
[gmx-users] Temperature variation of CHARMM force field Justin Lemkul
[gmx-users] GPU and aux power supply Alex
[gmx-users] metal nanoparticles Alex
[gmx-users] metal nanoparticles Nima Sa
[gmx-users] Hydrogen bonds Dr. Seema Mishra
[gmx-users] Hydrogen bonds soumadwip ghosh
[gmx-users] Hydrogen bonds Dr. Seema Mishra
[gmx-users] PBC issue Christopher Neale
[gmx-users] Why is there a difference between an angle of 0 or 180 deg. for a type 9 proper dihedral with multiplicity of 2? Christopher Neale
[gmx-users] calculating electric field force mah maz
[gmx-users] freezing graphene sheet Golnaz Roudsari
[gmx-users] freezing graphene sheet Alex
[gmx-users] freezing graphene sheet Maryam Kowsar
[gmx-users] Hydrogen bonds soumadwip ghosh
[gmx-users] GPU gromacs James Lord
[gmx-users] Hydrogen bonds Justin Lemkul
[gmx-users] Why is there a difference between an angle of 0 or 180 deg. for a type 9 proper dihedral with multiplicity of 2? Justin Lemkul
[gmx-users] Temperature variation of CHARMM force field soumadwip ghosh
[gmx-users] pdb2gmx error Saman Shahriyari
[gmx-users] Measuring the Influence of Harmonic Restraints Natalie Nguyen
[gmx-users] gromacs 5.0 tools: gmx distance and gmx mindist time series Ullmann, Thomas
[gmx-users] Why is there a difference between an angle of 0 or 180 deg. for a type 9 proper dihedral with multiplicity of 2? Christopher Neale
[gmx-users] Why is there a difference between an angle of 0 or 180 deg. for a type 9 proper dihedral with multiplicity of 2? Christopher Neale
[gmx-users] restrain COM of a group of atoms Ming Tang
[gmx-users] pdb2gmx error Saman Shahriyari
[gmx-users] on trjcat command Brett
[gmx-users] on trjcat command Tsjerk Wassenaar
[gmx-users] g_clustsize V.V.Chaban
[gmx-users] restrain COM of a group of atoms V.V.Chaban
[gmx-users] Why is there a difference between an angle of 0 or 180 deg. for a type 9 proper dihedral with multiplicity of 2? Justin Lemkul
[gmx-users] Why is there a difference between an angle of 0 or 180 deg. for a type 9 proper dihedral with multiplicity of 2? Christopher Neale
[gmx-users] Why is there a difference between an angle of 0 or 180 deg. for a type 9 proper dihedral with multiplicity of 2? Justin Lemkul
[gmx-users] g_clustsize David van der Spoel
[gmx-users] Why is there a difference between an angle of 0 or 180 deg. for a type 9 proper dihedral with multiplicity of 2? Christopher Neale
[gmx-users] g_clustsize V.V.Chaban
[gmx-users] Installation problem Nima Soltani
[gmx-users] Missing terminal cap group anu chandra
[gmx-users] Topology for ready-made membrane protein system anu chandra
[gmx-users] Installation problem Mark Abraham
[gmx-users] Missing terminal cap group Justin Lemkul
[gmx-users] Topology for ready-made membrane protein system Justin Lemkul
[gmx-users] GPU/CPU load imbalance Pappu Kumar
[gmx-users] Topology for ready-made membrane protein system Mark Abraham
[gmx-users] monitor the size of the computational box Giannis Gl
[gmx-users] monitor the size of the computational box Justin Lemkul
[gmx-users] Gromcas tools listing with 'gmx' anu chandra
[gmx-users] Energy contribution of individual residues Victor Rosas Garcia
[gmx-users] GPU gromacs Szilárd Páll
[gmx-users] GPU/CPU load imbalance Szilárd Páll
[gmx-users] Gromcas tools listing with 'gmx' Mark Abraham
[gmx-users] g_clustsize David van der Spoel
[gmx-users] GROMACS 5.1 release candidate available Mark Abraham
[gmx-users] Gromcas tools listing with 'gmx' Alex
[gmx-users] trouble diagnosing a simulation that's blowing up (shake not converging --> segmentation fault) Nathan K Houtz
[gmx-users] question Atila Petrosian
[gmx-users] Building gromacs on CRAY XC40 Sabyasachi Sahoo
[gmx-users] How to justify when the trajectory reached equilibrium Qing Lv
[gmx-users] Building gromacs on CRAY XC40 Roland Schulz
[gmx-users] Building gromacs on CRAY XC40 Sabyasachi Sahoo
[gmx-users] trouble diagnosing a simulation that's blowing up (shake not converging --> segmentation fault) Mark Abraham
[gmx-users] question Mark Abraham
[gmx-users] gromacs gpu code Wayne Liang
[gmx-users] gromacs gpu code Mark Abraham
[gmx-users] Gromcas tools listing with 'gmx' anu chandra
[gmx-users] Gromcas tools listing with 'gmx' Mark Abraham
[gmx-users] GPU/CPU load imbalance Pappu Kumar
[gmx-users] Gromcas tools listing with 'gmx' anu chandra
[gmx-users] Problem in .gro file faride badalkhani
[gmx-users] Calculating hydrogen bonding density - issues with g_sas? Dan Gil
[gmx-users] Calculating hydrogen bonding density - issues with g_sas? Mark Abraham
[gmx-users] element symbol column in a pdb using editconf Rebeca García Fandiño
[gmx-users] element symbol column in a pdb using editconf Mark Abraham
[gmx-users] Calculating hydrogen bonding density - issues with g_sas? Dan Gil
[gmx-users] element symbol column in a pdb using editconf Rebeca García Fandiño
[gmx-users] element symbol column in a pdb using editconf Mark Abraham
[gmx-users] element symbol column in a pdb using editconf Rebeca García Fandiño
[gmx-users] element symbol column in a pdb using editconf Mark Abraham
[gmx-users] element symbol column in a pdb using editconf Rebeca García Fandiño
[gmx-users] How to add a repulsive harmonic potential through define virtual atom? masoud aliyar
[gmx-users] Problem in .gro file Justin Lemkul
[gmx-users] How to add a repulsive harmonic potential through define virtual atom? Justin Lemkul
[gmx-users] how to make 8M solutions?? SAPNA BORAH
[gmx-users] no GPU detected Albert
[gmx-users] how to make 8M solutions?? Mark Abraham
[gmx-users] no GPU detected Mark Abraham
[gmx-users] no GPU detected Albert
[gmx-users] pdb2gmx error Sotirios Dionysios I. Papadatos
[gmx-users] no GPU detected Mark Abraham
[gmx-users] pdb2gmx error with addition of terminal group anu chandra
[gmx-users] pdb2gmx error with addition of terminal group Justin Lemkul
[gmx-users] color map vgsplayer1
[gmx-users] color map Justin Lemkul
[gmx-users] Problem in equilibration of POPS lipid bilayer Padmani Sandhu
[gmx-users] Problem in equilibration of POPS lipid bilayer Justin Lemkul
[gmx-users] Multiple output trajectories with different sampling frequencies Machtens, Jan-Philipp
[gmx-users] pdb2gmx error with addition of terminal group anu chandra
[gmx-users] Simulating Peptides su
[gmx-users] Simulating Peptides Mateusz Marianski
[gmx-users] Free energy change with harmonic restraints Natalie Nguyen
[gmx-users] pdb2gmx error "residue not found in residue topology database" Hamisu Aliyu Mohd
[gmx-users] no GPU detected Szilárd Páll
[gmx-users] no GPU detected Albert
[gmx-users] Calculating hydrogen bonding density - issues with g_sas? Dan Gil
[gmx-users] Simulating Peptides su
[gmx-users] pdb2gmx error "residue not found in residue topology database" Peter Stern
[gmx-users] Problem in .gro file faride badalkhani
[gmx-users] pdb2gmx error "residue not found in residue topology database" su
[gmx-users] Fw: Simulation of polarizable Carbon nanotubes S.M. Golam Mortuza
[gmx-users] Fw: Simulation of polarizable Carbon nanotubes Justin Lemkul
[gmx-users] Problem in .gro file Justin Lemkul
[gmx-users] Fw: Simulation of polarizable Carbon nanotubes Justin Lemkul
[gmx-users] Energy minimization Malihe Hasanzadeh
[gmx-users] trouble diagnosing a simulation that's blowing up (shake not converging --> segmentation fault) Nathan K Houtz
[gmx-users] How to justify when the trajectory reached equilibrium Qing Lv
[gmx-users] Problem in equilibration of POPS lipid bilayer Padmani Sandhu
[gmx-users] Grompp checkpoint bug? Dries Van Rompaey
[gmx-users] Problem with the MDS extended trajectory in Gromacs 5.04 PAULAMI CHATTERJEE
[gmx-users] (no subject) PAULAMI CHATTERJEE
[gmx-users] Energy minimization Justin Lemkul
[gmx-users] trouble diagnosing a simulation that's blowing up (shake not converging --> segmentation fault) Justin Lemkul
[gmx-users] How to justify when the trajectory reached equilibrium Justin Lemkul
[gmx-users] Problem with the MDS extended trajectory in Gromacs 5.04 Justin Lemkul
[gmx-users] pdb2gmx error "residue not found in residue topology database" Peter Stern
[gmx-users] Free energy change with harmonic restraints asaffarhi at post.tau.ac.il
[gmx-users] pdb2gmx error "residue not found in residue topology database" su
[gmx-users] Multiple output trajectories with different sampling frequencies Mark Abraham
[gmx-users] Grompp checkpoint bug? Mark Abraham
[gmx-users] Grompp checkpoint bug? Mark Abraham
[gmx-users] Problem with the MDS extended trajectory in GROMACS 5.0.4 soumadwip ghosh
[gmx-users] Free energy change with harmonic restraints Natalie Nguyen
[gmx-users] How to justify when the trajectory reached equilibrium Qing Lv
[gmx-users] Free energy change with harmonic restraints hannes.loeffler at stfc.ac.uk
[gmx-users] Free energy change with harmonic restraints asaffarhi at post.tau.ac.il
[gmx-users] Free energy change with harmonic restraints asaffarhi at post.tau.ac.il
[gmx-users] echo "15 y 1 1 ......" failed for "gmx pdb2gmx" with "-merge" Zhang, Cheng
[gmx-users] pdb2gmx error "residue not found in residue topology database" Hamisu Aliyu Mohd
[gmx-users] after extending simulation Andrea Spinelli
[gmx-users] after extending simulation Justin Lemkul
[gmx-users] How to justify when the trajectory reached equilibrium Justin Lemkul
[gmx-users] after extending simulation Andrea Spinelli
[gmx-users] after extending simulation Justin Lemkul
[gmx-users] after extending simulation Andrea Spinelli
[gmx-users] after extending simulation Justin Lemkul
[gmx-users] after extending simulation Andrea Spinelli
[gmx-users] Free energy change with harmonic restraints Natalie Nguyen
[gmx-users] Problem with the MDS extended trajectory in Gromacs 5.04 PAULAMI CHATTERJEE
[gmx-users] Problem with the MDS extended trajectory in GROMACS 5.0.4 PAULAMI CHATTERJEE
[gmx-users] maintaining stability when uncoupling ion pairs andrew biedermann
[gmx-users] Problem with the MDS extended trajectory in Gromacs 5.04 Justin Lemkul
[gmx-users] after extending simulation Justin Lemkul
[gmx-users] maintaining stability when uncoupling ion pairs Michael Shirts
[gmx-users] Free energy change with harmonic restraints asaffarhi at post.tau.ac.il
[gmx-users] g_hbond Nilesh Dhumal
[gmx-users] g_hbond Justin Lemkul
[gmx-users] g_hbond Nilesh Dhumal
[gmx-users] g_hbond Justin Lemkul
[gmx-users] g_hbond Nilesh Dhumal
[gmx-users] trouble diagnosing a simulation that's blowing up (shake not converging --> segmentation fault) Nathan K Houtz
[gmx-users] on trjconv command Brett
[gmx-users] on trjconv command Qing Lv
[gmx-users] How to justify when the trajectory reached equilibrium Qing Lv
[gmx-users] how to make 8M solutions?? SAPNA BORAH
[gmx-users] Question regarding box size James Lord
[gmx-users] Simulation with ligand on protein surface az
[gmx-users] Free energy change with harmonic restraints bipin singh
[gmx-users] gmx 5.0 installation with cuda Raju
[gmx-users] How to mention torsional parameter in toplogy Tushar Ranjan Moharana
[gmx-users] gmx 5.0 installation with cuda Tru Huynh
[gmx-users] Problem with the MDS extended trajectory in Gromacs 5.04 PAULAMI CHATTERJEE
[gmx-users] g_hbond Nilesh Dhumal
[gmx-users] Grompp Error No default Ryckaert-Bell. types Anurag Dobhal
[gmx-users] g_hbond Erik Marklund
[gmx-users] g_hbond Nilesh Dhumal
[gmx-users] g_hbond Erik Marklund
[gmx-users] g_hbond Nilesh Dhumal
[gmx-users] Question regarding box size Victor Rosas Garcia
[gmx-users] Free energy change with harmonic restraints Natalie Nguyen
[gmx-users] trouble diagnosing a simulation that's blowing up (shake not converging --> segmentation fault) Justin Lemkul
[gmx-users] How to justify when the trajectory reached equilibrium Justin Lemkul
[gmx-users] Simulation with ligand on protein surface Justin Lemkul
[gmx-users] Problem with the MDS extended trajectory in Gromacs 5.04 Justin Lemkul
[gmx-users] Grompp Error No default Ryckaert-Bell. types Justin Lemkul
[gmx-users] Question regarding box size Justin Lemkul
[gmx-users] trouble diagnosing a simulation that's blowing up (shake not converging --> segmentation fault) Nathan K Houtz
[gmx-users] trouble diagnosing a simulation that's blowing up (shake not converging --> segmentation fault) Mark Abraham
[gmx-users] trouble diagnosing a simulation that's blowing up (shake not converging --> segmentation fault) Nathan K Houtz
[gmx-users] trouble diagnosing a simulation that's blowing up (shake not converging --> segmentation fault) Mark Abraham
[gmx-users] difference between steep and cg Ming Tang
[gmx-users] restrain COM of a group of atoms Ming Tang
[gmx-users] How to justify when the trajectory reached equilibrium Qing Lv
[gmx-users] Question regarding box size James Lord
[gmx-users] Dihedral copying from itp to ff tarak karmakar
[gmx-users] (no subject) tarak karmakar
[gmx-users] Adding missing heavy atoms prasun kumar
[gmx-users] Adding missing heavy atoms tarak karmakar
[gmx-users] RB dihedral type in amber99sb-ildn ffbonded.itp tarak karmakar
[gmx-users] Simulation with ligand on protein surface adam zalewski
[gmx-users] question Atila Petrosian
[gmx-users] difference between steep and cg Tsjerk Wassenaar
[gmx-users] g_hbond Erik Marklund
[gmx-users] g_hbond Nilesh Dhumal
[gmx-users] GPU gromacs James Lord
[gmx-users] Reaching the desired pressure and density Nima Sa
[gmx-users] on VMD analysis of the gromacs production MD Brett
[gmx-users] on VMD analysis of the gromacs production MD Brett
[gmx-users] question Justin Lemkul
[gmx-users] RB dihedral type in amber99sb-ildn ffbonded.itp Justin Lemkul
[gmx-users] Simulation with ligand on protein surface Justin Lemkul
[gmx-users] trouble diagnosing a simulation that's blowing up (shake not converging --> segmentation fault) Justin Lemkul
[gmx-users] question Alex
[gmx-users] trouble diagnosing a simulation that's blowing up (shake not converging --> segmentation fault) Justin Lemkul
[gmx-users] Adding missing heavy atoms Justin Lemkul
[gmx-users] H-bonding autocorrelation function fyyan at andrew.cmu.edu
[gmx-users] Free energy change with harmonic restraints asaffarhi at post.tau.ac.il
[gmx-users] Please answer this!!! Nima Sa
[gmx-users] Polymer melt clumping Pallavi Banerjee
[gmx-users] Polymer melt clumping Justin Lemkul
[gmx-users] Please answer this!!! (Reaching the desired pressure and density) Justin Lemkul
[gmx-users] on VMD analysis of the gromacs production MD Justin Lemkul
[gmx-users] H-bonding autocorrelation function fyyan at andrew.cmu.edu
[gmx-users] Please answer this!!! (Reaching the desired pressure and density) Nima Sa
[gmx-users] difference between steep and cg Ming Tang
[gmx-users] Installing gmx 5.0.5 in mpi Raju
[gmx-users] Error in lipid_protein simulation ( Energy minimization) shabana yasmeen
[gmx-users] How does x2top recognize between alkane C and alkene C sridhar dwadasi
[gmx-users] Grompp checkpoint bug? Dries Van Rompaey
[gmx-users] (no subject) Andrew Bostick
[gmx-users] Installing gmx 5.0.5 in mpi Mark Abraham
[gmx-users] Radius of Gyration Daskalakis Vangelis
[gmx-users] Fwd: monitor the size of the computational box Giannis Gl
[gmx-users] Radius of Gyration Peter Kroon
[gmx-users] Fwd: monitor the size of the computational box Peter Kroon
[gmx-users] Radius of Gyration Daskalakis Vangelis
[gmx-users] Regression test for mdrun only installation Kortzak, Daniel
[gmx-users] Regression test for mdrun only installation Mark Abraham
[gmx-users] (no subject) Justin Lemkul
[gmx-users] How does x2top recognize between alkane C and alkene C Justin Lemkul
[gmx-users] Error in lipid_protein simulation ( Energy minimization) Justin Lemkul
[gmx-users] Grompp checkpoint bug? Mark Abraham
[gmx-users] Radius of Gyration Erik Marklund
[gmx-users] Extending Simnulation - how analyze? Andrea Spinelli
[gmx-users] Extending Simnulation - how analyze? Mark Abraham
[gmx-users] Radius of Gyration Daskalakis Vangelis
[gmx-users] Extending Simnulation - how analyze? V.V.Chaban
[gmx-users] Extending Simnulation - how analyze? Andrea Spinelli
[gmx-users] LINCS WARNING Sun Iba
[gmx-users] Extending Simnulation - how analyze? Mark Abraham
[gmx-users] Extending Simnulation - how analyze? Andrea Spinelli
[gmx-users] Extending Simnulation - how analyze? Mark Abraham
[gmx-users] Ions moving to the opposite layer during minimization. anu chandra
[gmx-users] Ions moving to the opposite layer during minimization. Mark Abraham
[gmx-users] deformation of DNA duplex soumadwip ghosh
[gmx-users] LINCS WARNING Justin Lemkul
[gmx-users] Free energy change with harmonic restraints Natalie Nguyen
[gmx-users] Free energy change with harmonic restraints asaffarhi at post.tau.ac.il
[gmx-users] GROMACS wall parameters shivangi nangia
[gmx-users] Ions moving to the opposite layer during minimization. anu chandra
[gmx-users] GROMACS wall parameters João Henriques
[gmx-users] GROMACS wall parameters João Henriques
[gmx-users] GROMACS wall parameters shivangi nangia
[gmx-users] GROMACS wall parameters João Henriques
[gmx-users] GROMACS wall parameters shivangi nangia
[gmx-users] gmx distance - COM distance issue Carlos Navarro Retamal
[gmx-users] how to center the molecule with trjconv Zhenyu Meng
[gmx-users] Expected Performance of a GPU workstation Jason Loo Siau Ee
[gmx-users] Expected Performance of a GPU workstation Kutzner, Carsten
[gmx-users] LJ-14 energy Ming Tang
[gmx-users] Errors "There were 2 inconsistent shifts. Check your topology" after I moved my peptide with VMD Vytautas Rakeviius
[gmx-users] Expected Performance of a GPU workstation Jason Loo Siau Ee
[gmx-users] clarification regarding input format for g_kinetics Smith, Micholas D.
[gmx-users] Extending Simnulation - how analyze? Andrea Spinelli
[gmx-users] Extending Simnulation - how analyze? V.V.Chaban
[gmx-users] LJ-14 energy V.V.Chaban
[gmx-users] gmx distance - COM distance issue V.V.Chaban
[gmx-users] gmx distance - COM distance issue Justin Lemkul
[gmx-users] Errors "There were 2 inconsistent shifts. Check your topology" after I moved my peptide with VMD V.V.Chaban
[gmx-users] how to center the molecule with trjconv Justin Lemkul
[gmx-users] LJ-14 energy Justin Lemkul
[gmx-users] How to treat c=c double bonds in gromos54a7 forcefield Isser, Ariel Y.
[gmx-users] Free energy calculations (FEP) and soft core potential 1-1-48 Julian Zachmann
[gmx-users] Free energy calculations (FEP) and soft core potential 1-1-48 Michael Shirts
[gmx-users] Free energy calculations (FEP) and soft core potential 1-1-48 Hannes Loeffler
[gmx-users] Drift in Conserved-Energy with Nose-Hoover thermostat Bernhard
[gmx-users] Deformation of DNA duplex soumadwip ghosh
[gmx-users] Position restraining of ions. anu chandra
[gmx-users] Free energy calculations (FEP) and soft core potential 1-1-48 Barnett, James W
[gmx-users] clarification regarding input format for g_kinetics David van der Spoel
[gmx-users] clarification regarding input format for g_kinetics Smith, Micholas D.
[gmx-users] Free energy calculations (FEP) and soft core potential 1-1-48 Julian Zachmann
[gmx-users] position restraining of ions soumadwip ghosh
[gmx-users] Free energy calculations (FEP) and soft core potential 1-1-48 Barnett, James W
[gmx-users] Deformation of DNA duplex Debayan Chakraborty
[gmx-users] Building a Larger Liquid Phase - Truncate 'Vacuum' John Degenstein
[gmx-users] clarification regarding input format for g_kinetics David van der Spoel
[gmx-users] gmx distance - COM distance issue Carlos Navarro Retamal
[gmx-users] [gm.-users] LJ-14 energy Ming Tang
[gmx-users] How to treat c=c double bonds in gromos54a7 forcefield Justin Lemkul
[gmx-users] Position restraining of ions. Justin Lemkul
[gmx-users] LJ-14 energy Ming Tang
[gmx-users] LJ-14 energy Justin Lemkul
[gmx-users] How does x2top recognize between alkane C and alkene C sridhar dwadasi
[gmx-users] Position restraining of ions. Gordan Horvat
[gmx-users] Histogram result in free energy calculation minky son
[gmx-users] Analysis of the RMSF of a ligand bound protein structure PAULAMI CHATTERJEE
[gmx-users] Position restraining of ions. anu chandra
[gmx-users] Position restraining of ions. Gordan Horvat
[gmx-users] Problem running equilibration step Priyanka Patel
[gmx-users] Problem running equilibration step Felipe Merino
[gmx-users] LJ-14 energy Ming Tang
[gmx-users] Problem running equilibration step Priyanka Patel
[gmx-users] How does x2top recognize between alkane C and alkene C Justin Lemkul
[gmx-users] Histogram result in free energy calculation Justin Lemkul
[gmx-users] Position restraining of ions. Justin Lemkul
[gmx-users] LJ-14 energy Justin Lemkul
[gmx-users] Problem running equilibration step Justin Lemkul
[gmx-users] gmx hydorder Jessica Leuchter
[gmx-users] Position restraining of ions. Gordan Horvat
[gmx-users] Position restraining of ions. anu chandra
[gmx-users] g_covar Segmentation fault problem gozde ergin
[gmx-users] solvation free energy Daniele Veclani
[gmx-users] solvation free energy Hannes Loeffler
[gmx-users] Intel MKL taken in preference of the specified FFT library Reuti
[gmx-users] Position restraining of ions. Justin Lemkul
[gmx-users] g_covar Segmentation fault problem Justin Lemkul
[gmx-users] g_covar Segmentation fault problem gozde ergin
[gmx-users] How does x2top recognize between alkane C and alkene C sridhar dwadasi
[gmx-users] g_covar Segmentation fault problem Justin Lemkul
[gmx-users] How does x2top recognize between alkane C and alkene C Justin Lemkul
[gmx-users] g_covar Segmentation fault problem gozde ergin
[gmx-users] g_covar Segmentation fault problem Justin Lemkul
[gmx-users] Intel MKL taken in preference of the specified FFT library Mark Abraham
[gmx-users] LJ-14 energy Mark Abraham
[gmx-users] there are particles with all coordinates zero Carlos Navarro Retamal
[gmx-users] problem in parametrization of NH2 group Nidhi Batra
[gmx-users] how to center the molecule with trjconv Zhenyu Meng
[gmx-users] Free Energy Calculations Live King
[gmx-users] solvation free energy Daniele Veclani
[gmx-users] solvation free energy hannes.loeffler at stfc.ac.uk
[gmx-users] solvation free energy Daniele Veclani
[gmx-users] Intel MKL taken in preference of the specified FFT library Reuti
[gmx-users] solvation free energy Hannes Loeffler
[gmx-users] Intel MKL taken in preference of the specified FFT library Mark Abraham
[gmx-users] solvation free energy Justin Lemkul
[gmx-users] Free Energy Calculations Justin Lemkul
[gmx-users] problem in parametrization of NH2 group Justin Lemkul
[gmx-users] there are particles with all coordinates zero Justin Lemkul
[gmx-users] solvation free energy Daniele Veclani
[gmx-users] solvation free energy Justin Lemkul
[gmx-users] CG: Tabulated potentials and temperature scaling Anna Akinshina
[gmx-users] CG: Tabulated potentials and temperature scaling V.V.Chaban
[gmx-users] Cross-correlation map of protein residues Ebert Maximilian
[gmx-users] solvation free energy Daniele Veclani
[gmx-users] Umbrella sampling - decomposing of free energy gozde ergin
[gmx-users] solvation free energy Justin Lemkul
[gmx-users] solvation free energy David van der Spoel
[gmx-users] Umbrella sampling - decomposing of free energy David van der Spoel
[gmx-users] solvation free energy Justin Lemkul
[gmx-users] solvation free energy Justin Lemkul
[gmx-users] Umbrella sampling - decomposing of free energy gozde ergin
[gmx-users] solvation free energy Daniele Veclani
[gmx-users] CG: Tabulated potentials and temperature scaling Anna Akinshina
[gmx-users] md-vv and md gozde ergin
[gmx-users] GROMACS 5.0.5 GPU version on K620 Krzysztof Kuczera
[gmx-users] GROMACS 5.0.5 GPU version on K620 Szilárd Páll
[gmx-users] GROMACS 5.0.5 GPU version on K620 Szilárd Páll
[gmx-users] Cross-correlation Dihedral Angle atanu das
[gmx-users] How to extract energies from the Gromacs trajectory file Rabindra Oliya
[gmx-users] md-vv and md Michael Shirts
[gmx-users] Cross-correlation map of protein residues bipin singh
[gmx-users] Location of Bubbles. sujithkakkat .
[gmx-users] Umbrella sampling - decomposing of free energy David van der Spoel
[gmx-users] Location of Bubbles. Jan Jirsák
[gmx-users] Location of Bubbles. Mark Abraham
[gmx-users] How to extract energies from the Gromacs trajectory file Mark Abraham
[gmx-users] CG: Tabulated potentials and temperature scaling Mark Abraham
[gmx-users] Location of Bubbles. sujithkakkat .
[gmx-users] LJ-14 energy Ming Tang
[gmx-users] RDF soumadwip ghosh
[gmx-users] LJ-14 energy Ming Tang
[gmx-users] Umbrella sampling - decomposing of free energy gozde ergin
[gmx-users] (no subject) Hassan Aaryapour
[gmx-users] LJ-14 energy Mark Abraham
[gmx-users] RDF André Farias de Moura
[gmx-users] PMF using umbrella sampling and Gromacs 5.0 Eudes Fileti
[gmx-users] g_hbond : normalization autocorrelation function. Nilesh Dhumal
[gmx-users] A question about simulation system includes more than 100000 atoms using Gromacs 张竹青
[gmx-users] A question about simulation system includes more than 100000 atoms using Gromacs Ming Tang
[gmx-users] A question about simulation system includes more than 100000 atoms using Gromacs Jan Jirsák
[gmx-users] g_hbond : normalization autocorrelation function. Erik Marklund
[gmx-users] g_hbond : normalization autocorrelation function. Nilesh Dhumal
[gmx-users] Calculating hydrogen bonding density - issues with g_sas? Teemu Murtola
[gmx-users] RDF V.V.Chaban
[gmx-users] How to calculate magnesium (MG) parameters for gbsa.itp Hassan Aaryapour
[gmx-users] Questions about GROMACS capabilities Eric Smoll
[gmx-users] segmentation fault Sikandar Mashayak
[gmx-users] MD exit condition Eric Smoll
[gmx-users] A question about simulation system includes more than 100000 atoms using Gromacs 张竹青
[gmx-users] Problem running equilibration step Priyanka Patel
[gmx-users] segmentation fault mah maz
[gmx-users] g_msd and Diffusion Constant Ganesh Shahane
[gmx-users] g_hbond : normalization autocorrelation function. Justin Lemkul
[gmx-users] MD exit condition Justin Lemkul
[gmx-users] Questions about GROMACS capabilities Justin Lemkul
[gmx-users] segmentation fault Justin Lemkul
[gmx-users] Gromacs 5.0.5 compilation error Yasser Almeida Hernández
[gmx-users] Histogram result in free energy calculation minky son
[gmx-users] GMXPBSA Urszula Uciechowska
[gmx-users] Enforced rotation errors Nash, Anthony
[gmx-users] Umbrella sampling - abnormal potential energy profile and wrong PMF profile gozde ergin
[gmx-users] md-vv and md gozde ergin
[gmx-users] GMXPBSA Andrea Spitaleri
[gmx-users] Enforced rotation errors Kutzner, Carsten
[gmx-users] angle between two vectors Natalia Alveal F.
[gmx-users] End-to-End Vector Relaxation Time atanu das
[gmx-users] segmentation fault mah maz
[gmx-users] g_msd and Diffusion Constant V.V.Chaban
[gmx-users] g_msd and Diffusion Constant Chandan Choudhury
[gmx-users] g_msd and Diffusion Constant Ganesh Shahane
[gmx-users] (no subject) Sana Saeed
[gmx-users] difference in -heavyh and -deuterate Sana Saeed
[gmx-users] g_msd and Diffusion Constant Chandan Choudhury
[gmx-users] difference in -heavyh and -deuterate Felipe Merino
[gmx-users] g_msd and Diffusion Constant Ganesh Shahane
[gmx-users] gromacs compilation in cygwin Ayesha Fatima
[gmx-users] angle between two vectors Teemu Murtola
[gmx-users] Create file topology in oplsaa Daniele Veclani
[gmx-users] gromacs compilation in cygwin Mark Abraham
[gmx-users] Repulsive potential Hassan Aaryapour
[gmx-users] difference in -heavyh and -deuterate Sana Saeed
[gmx-users] Create file topology in oplsaa gozde ergin
[gmx-users] Gromacs single sum virial calculation for periodic systems Julius Schulz
[gmx-users] g_msd and Diffusion Constant V.V.Chaban
[gmx-users] Gromos 53a6, .mdp parameters for reaction field Mohsen Ramezanpour
[gmx-users] Gromos 53a6, .mdp parameters for reaction field V.V.Chaban
[gmx-users] Reverse micelle clustering issue Tyler Cropley
[gmx-users] Gromos 53a6, .mdp parameters for reaction field João M. Damas
[gmx-users] Gromacs single sum virial calculation for periodic systems David van der Spoel
[gmx-users] Gromos 53a6, .mdp parameters for reaction field Mohsen Ramezanpour
[gmx-users] Gromacs single sum virial calculation for periodic systems Julius Schulz
[gmx-users] Gromos 53a6, .mdp parameters for reaction field Mohsen Ramezanpour
[gmx-users] Gromos 53a6, .mdp parameters for reaction field V.V.Chaban
[gmx-users] Reverse micelle clustering issue V.V.Chaban
[gmx-users] GROMACS 5.0.5 GPU version on K620 Krzysztof Kuczera
[gmx-users] Gromos 53a6, .mdp parameters for reaction field João M. Damas
[gmx-users] Gromos 53a6, .mdp parameters for reaction field Mohsen Ramezanpour
[gmx-users] Histogram result in free energy calculation Justin Lemkul
[gmx-users] g_msd and Diffusion Constant Ganesh Shahane
[gmx-users] gromos43a1p issue with ATP Saman Shahriyari
[gmx-users] Reverse micelle clustering issue ABEL Stephane 175950
[gmx-users] itp file not found James Lord
[gmx-users] Distance issue Navneet Chaturvedi
[gmx-users] Fwd: itp file not found James Lord
[gmx-users] Fwd: itp file not found James Lord
[gmx-users] g_msd and Diffusion Constant V.V.Chaban
[gmx-users] Distance issue V.V.Chaban
[gmx-users] -ignh correct usage Sana Saeed
[gmx-users] Cross-correlation map of protein residues Ebert Maximilian
[gmx-users] Create file topology in oplsaa Ebert Maximilian
[gmx-users] PMF using umbrella sampling and Gromacs 5.0 Christopher Neale
[gmx-users] Gromacs single sum virial calculation for periodic systems Julius Schulz
[gmx-users] Adding missing heavy atoms prasun kumar
[gmx-users] gromacs 5 pdb2gmx does not faithfully reproduce the AMBER99sb-ILDN force field Christopher Neale
[gmx-users] gromacs 5 pdb2gmx does not faithfully reproduce the AMBER99sb-ILDN force field Marcelo Depólo
[gmx-users] Reverse micelle clustering issue Tyler Cropley
[gmx-users] gromacs 5 pdb2gmx does not faithfully reproduce the AMBER99sb-ILDN force field Szilárd Páll
[gmx-users] gromacs 5 pdb2gmx does not faithfully reproduce the AMBER99sb-ILDN force field Szilárd Páll
[gmx-users] GROMACS 5.0.5 GPU version on K620 Szilárd Páll
[gmx-users] angle between two vectors Natalia Alveal F.
[gmx-users] Distance Issue V.V.Chaban
[gmx-users] (no subject) Mayank Dixit
[gmx-users] Topology file for serotonin (5-HT) Ganesh Shahane
[gmx-users] box type parameters Sana Saeed
[gmx-users] Linking contrib program issue Michael Cristòfol Clough
[gmx-users] magnetic field - segmentation fault Maryam Kowsar
[gmx-users] magnetic field - segmentation fault Erik Marklund
[gmx-users] non-bonded kernels for water Sikandar Mashayak
[gmx-users] Enforced rotation errors Nash, Anthony
[gmx-users] Enforced rotation errors Nash, Anthony
[gmx-users] itp file not found James Lord
[gmx-users] multi threads pinning problem Zhenyu Meng
[gmx-users] magnetic field - segmentation fault Man Hoang Viet
[gmx-users] energy group exclusion in gromacs 5.0.2 Steven Neumann
[gmx-users] Best step to run simulation over GPU? RJ
[gmx-users] Question about biphasic tutorial James Lord
[gmx-users] Chlorine in PDBs az
[gmx-users] Best step to run simulation over GPU? Kutzner, Carsten
[gmx-users] Enforced rotation errors Kutzner, Carsten
[gmx-users] itp file not found su
[gmx-users] multi threads pinning problem terrencesun at gmail.com
[gmx-users] GTP and GTP topology for OPLS-AA force field Christian Bope Domilongo
[gmx-users] GTP and GTP topology for OPLS-AA force field Christian Bope Domilongo
[gmx-users] multi threads pinning problem Mark Abraham
[gmx-users] non-bonded kernels for water Mark Abraham
[gmx-users] Linking contrib program issue Mark Abraham
[gmx-users] Chlorine in PDBs Smith, Micholas D.
[gmx-users] Chlorine in PDBs az
[gmx-users] Linking contrib program issue Michael Cristòfol Clough
[gmx-users] Regarding engineered residue topology Venkat Reddy
[gmx-users] magnetic field - segmentation fault Maryam Kowsar
[gmx-users] regarding parallel tempering replica exchange Kumar Meena, Santosh
[gmx-users] PMF using umbrella sampling and Gromacs 5.0 (Eudes Fileti) Eudes Fileti
[gmx-users] gromos43a1p issue with ATP Saman Shahriyari
[gmx-users] error with gen-vel and continuation in nvt Mahboobe Sadr
[gmx-users] error with gen-vel and continuation in nvt Tamisra Pal
[gmx-users] error with gen-vel and continuation in nvt Mahboobe Sadr
[gmx-users] adding a new residue to residuetypes.dat faride badalkhani
[gmx-users] Issues using tabulated potentials for coarse-grained simulation Tamisra Pal
[gmx-users] Fwd: Issues using tabulated potentials for coarse-grained simulation Tamisra Pal
[gmx-users] Default cut-off scheme. Dawid das
[gmx-users] magnetic field - segmentation fault Erik Marklund
[gmx-users] Default cut-off scheme. Tamisra Pal
[gmx-users] Default cut-off scheme. Mark Abraham
[gmx-users] Gromos54a8 melichercik at leaf.nh.cas.cz
[gmx-users] PMF using umbrella sampling and Gromacs 5.0 (Eudes Fileti) Christopher Neale
[gmx-users] Default cut-off scheme. Dawid das
[gmx-users] pdb2gmx error faride badalkhani
[gmx-users] pdb2gmx warning faride badalkhani
[gmx-users] GROMACS 5.0.6 released Mark Abraham
[gmx-users] -d for all boxtypes Sana Saeed
[gmx-users] Adding missing heavy atoms Justin Lemkul
[gmx-users] Topology file for serotonin (5-HT) Justin Lemkul
[gmx-users] Question about biphasic tutorial Justin Lemkul
[gmx-users] Regarding engineered residue topology Justin Lemkul
[gmx-users] adding a new residue to residuetypes.dat Justin Lemkul
[gmx-users] pdb2gmx error Justin Lemkul
[gmx-users] pdb2gmx warning Justin Lemkul
[gmx-users] Best step to run simulation over GPU? 라지브간디
[gmx-users] Topology file for serotonin (5-HT) Ganesh Shahane
[gmx-users] Best step to run simulation over GPU? Kutzner, Carsten
[gmx-users] Regarding engineered residue topology Venkat Reddy
[gmx-users] performance of e5 2630 CPU with gtx-titan GPU Netaly Khazanov
[gmx-users] magnetic field - segmentation fault Maryam Kowsar
[gmx-users] Gromacs Path Live King
[gmx-users] Best step to run simulation over GPU? Rajiv
[gmx-users] Gromacs Path James Lord
[gmx-users] Best step to run simulation over GPU? Kutzner, Carsten
[gmx-users] Question about biphasic tutorial James Lord
[gmx-users] Question about pdb2gmx Eric Smoll
[gmx-users] (no subject) hari ram
[gmx-users] Incomplete ring hari ram
[gmx-users] multi threads pinning problem Zhenyu Meng
[gmx-users] Topology file for serotonin (5-HT) Justin Lemkul
[gmx-users] Regarding engineered residue topology Justin Lemkul
[gmx-users] Question about pdb2gmx Justin Lemkul
[gmx-users] Incomplete ring Justin Lemkul
[gmx-users] g_rdf problem Zhenyu Meng
[gmx-users] solvation free energy, electrostatic transformation Daniele Veclani
[gmx-users] solvation free energy, electrostatic transformation Justin Lemkul
[gmx-users] solvation free energy, electrostatic transformation Hannes Loeffler
[gmx-users] solvation free energy, electrostatic transformation Justin Lemkul
[gmx-users] solvation free energy, electrostatic transformation Daniele Veclani
[gmx-users] solvation free energy, electrostatic transformation Justin Lemkul
[gmx-users] solvation free energy, electrostatic transformation Daniele Veclani
[gmx-users] g_rdf problem André Farias de Moura
[gmx-users] solvation free energy, electrostatic transformation Justin Lemkul
[gmx-users] magnetic field - segmentation fault Man Hoang Viet
[gmx-users] -d for all boxtypes Tsjerk Wassenaar
[gmx-users] Issues using tabulated potentials for coarse-grained simulation Brian Yoo
[gmx-users] Topology file for serotonin (5-HT) Hassan Aaryapour
[gmx-users] Question about mdrun -rerun Ian Kotthoff
[gmx-users] Are water molecules restrained "by default"? Dawid das
[gmx-users] Question about mdrun -rerun Justin Lemkul
[gmx-users] Are water molecules restrained "by default"? Justin Lemkul
[gmx-users] Question about mdrun -rerun Ian Kotthoff
[gmx-users] Question about mdrun -rerun Justin Lemkul
[gmx-users] Question about mdrun -rerun Ian Kotthoff
[gmx-users] Exclude non-bonded on GPUs? Steven Neumann
[gmx-users] Measuring Bilayer thickness with gmx distance in CGMD simulations Carlos Navarro Retamal
[gmx-users] Regarding engineered residue topology Venkat Reddy
[gmx-users] Problem with Inflategro fatemeh
[gmx-users] PMF using umbrella sampling and Gromacs 5.0 Eudes Fileti
[gmx-users] problem with kalp simulation in DPPC fatemeh
[gmx-users] relative constraint deviation after LINCS Pallavi Banerjee
[gmx-users] Measuring Bilayer thickness with gmx distance in CGMD simulations Justin Lemkul
[gmx-users] Regarding engineered residue topology Justin Lemkul
[gmx-users] on MD simulation of ATP hydrolysis driven protein conformational change Brett
[gmx-users] on MD simulation of ATP hydrolysis driven protein conformational change Brett
[gmx-users] Regarding engineered residue topology Venkat Reddy
[gmx-users] PMF using umbrella sampling and Gromacs 5.0 Christopher Neale
[gmx-users] problem with kalp simulation in DPPC Justin Lemkul
[gmx-users] Regarding engineered residue topology Justin Lemkul
[gmx-users] Are water molecules restrained "by default"? Dawid das
[gmx-users] Are water molecules restrained "by default"? Justin Lemkul
[gmx-users] Are water molecules restrained "by default"? Dawid das
[gmx-users] Are water molecules restrained "by default"? Justin Lemkul
[gmx-users] Are water molecules restrained "by default"? Dawid das
[gmx-users] Measuring Bilayer thickness with gmx distance in CGMD simulations Carlos Navarro Retamal
[gmx-users] PMF using umbrella sampling and Gromacs 5.0 Eudes Fileti
[gmx-users] (no subject) Sotirios Dionysios I. Papadatos
[gmx-users] Measuring Bilayer thickness with gmx distance in CGMD simulations Teemu Murtola
[gmx-users] performance of e5 2630 CPU with gtx-titan GPU Netaly Khazanov
[gmx-users] Question about redundancy in forcefield files and dihedral parameterization Eric Smoll
[gmx-users] Measuring Bilayer thickness with gmx distance in CGMD simulations Carlos Navarro Retamal
[gmx-users] Question about forcefield files Eric Smoll
[gmx-users] Question about forcefield files Michael Shirts
[gmx-users] Atom type SDMSO not found su
[gmx-users] Atom type SDMSO not found Sun Iba
[gmx-users] Question about editconf -noc flag James Lord
[gmx-users] Fwd: Question about editconf -noc flag James Lord
[gmx-users] Issues using tabulated potentials for coarse-grained simulation Tamisra Pal
[gmx-users] Measuring Bilayer thickness with gmx distance in CGMD simulations Peter Kroon
[gmx-users] performance of e5 2630 CPU with gtx-titan GPU Kutzner, Carsten
[gmx-users] performance of e5 2630 CPU with gtx-titan GPU Netaly Khazanov
[gmx-users] request fatemeh
[gmx-users] on MD simulation of ATP hydrolysis driven protein conformational change Ana Sofia Fernandes Oliveira
[gmx-users] None constraints and l-bfgs. Dawid das
[gmx-users] Atom type SDMSO not found Justin Lemkul
[gmx-users] Atom type SDMSO not found Justin Lemkul
[gmx-users] Fwd: Question about editconf -noc flag Justin Lemkul
[gmx-users] None constraints and l-bfgs. Justin Lemkul
[gmx-users] None constraints and l-bfgs. Dawid das
[gmx-users] Settle vs. 3 normal constraints Andreas Mecklenfeld
[gmx-users] a few detailed questions about the topology file format Eric Smoll
[gmx-users] Jumping to other side of box Marzieh Saeedi Masineh
[gmx-users] Building a Larger Liquid Phase - Truncate 'Vacuum' Elton Carvalho
[gmx-users] Alchemical free energy calculations - right choice of lambda points? What else might I do wrong? Julian Zachmann
[gmx-users] Study of sampling of villin headpiece Mario Fernández Pendás
[gmx-users] Alchemical free energy calculations - right choice of lambda points? What else might I do wrong? hannes.loeffler at stfc.ac.uk
[gmx-users] Alchemical free energy calculations - right choice of lambda points? What else might I do wrong? asaffarhi at post.tau.ac.il
[gmx-users] MD simulations hari ram
[gmx-users] Alchemical free energy calculations - right choice of lambda points? What else might I do wrong? hannes.loeffler at stfc.ac.uk
[gmx-users] Alchemical free energy calculations - right choice of lambda points? What else might I do wrong? asaffarhi at post.tau.ac.il
[gmx-users] MD simulations soumadwip ghosh
[gmx-users] MD simulations Tsjerk Wassenaar
[gmx-users] Jumping to other side of box Mark Abraham
[gmx-users] a few detailed questions about the topology file format Mark Abraham
[gmx-users] a few detailed questions about the topology file format Mark Abraham
[gmx-users] Study of sampling of villin headpiece Mark Abraham
[gmx-users] Settle vs. 3 normal constraints Mark Abraham
[gmx-users] Settle vs. 3 normal constraints Mark Abraham
[gmx-users] Settle vs. 3 normal constraints Andreas Mecklenfeld
[gmx-users] Alchemical free energy calculations - right choice of lambda points? What else might I do wrong? Julian Zachmann
[gmx-users] Alchemical free energy calculations - right choice of lambda points? What else might I do wrong? Julian Zachmann
[gmx-users] Alchemical free energy calculations - right choice of lambda points? What else might I do wrong? asaffarhi at post.tau.ac.il
[gmx-users] MD simulations Nixon Raj
[gmx-users] question Atila Petrosian
[gmx-users] Building a Larger Liquid Phase - Truncate 'Vacuum' Justin Lemkul
[gmx-users] Building a Larger Liquid Phase - Truncate 'Vacuum' Elton Carvalho
[gmx-users] g_rdf problem Zhenyu Meng
[gmx-users] Jump of drug to other side of lipid bilayer Marzieh Saeedi Masineh
[gmx-users] submitting gmx cluster Lábas Anikó
[gmx-users] DFTB implementation Zhenyu Meng
[gmx-users] Fwd: DFTB implementation Zhenyu Meng
[gmx-users] submitting gmx cluster Kutzner, Carsten
[gmx-users] KTH Comput Biophysics xy21hb
[gmx-users] submitting gmx cluster Smith, Micholas D.
[gmx-users] submitting gmx cluster Peter Stern
[gmx-users] submitting gmx cluster Lábas Anikó
[gmx-users] g_rdf problem André Farias de Moura
[gmx-users] Eccentricity of Reverse Micelle Tyler Cropley
[gmx-users] Eccentricity of Reverse Micelle André Farias de Moura
[gmx-users] Jump of drug to other side of lipid bilayer Mark Abraham

Last message date: Fri Jul 31 18:27:31 CEST 2015
Archived on: Fri Jul 31 18:27:33 CEST 2015

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