[gmx-users] GMXPBSA

[Urszula Uciechowska]

Dear gromacs users,

I would like to run BFE calculations with gromacs. I performed MD
simulations for 100ns and would like to extract snapshots from the MD and
split them into the complex, protein and DNA. My question is how many sps
should I extarct from the MD?  and Are there any scripts available for
this step?

Thanks for any suggestions

best regards
Urszula


University of Gdansk and Medical Univesity of Gdansk
Department of Molecular and Cellular Biology
ul. Kladki 24
80-822 Gdansk
Poland


-----------------------------------------
Ta wiadomość została wysłana z serwera Uniwersytetu Gdańskiego
http://www.ug.edu.pl/